Method Article
This protocol describes techniques for evaluating chemical cross-linking of the rabbit sclera using second harmonic generation imaging and differential scanning calorimetry.
Methods to strengthen tissue by introducing chemical bonds (non-enzymatic cross-linking) into structural proteins (fibrillar collagens) for therapy include photochemical cross-linking and tissue cross-linking (TXL) methods. Such methods for inducing mechanical tissue property changes are being employed to the cornea in corneal thinning (mechanically weakened) disorders such as keratoconus as well as the sclera in progressive myopia, where thinning and weakening of the posterior sclera occurs and likely contributes to axial elongation. The primary target proteins for such tissue strengthening are fibrillar collagens which constitute the great majority of dry weight proteins in the cornea and sclera. Fortuitously, fibrillar collagens are the main source of second harmonic generation signals in the tissue extracellular space. Therefore, modifications of the collagen proteins, such as those induced through cross-linking therapies, could potentially be detected and quantitated through the use of second harmonic generation microscopy (SHGM). Monitoring SHGM signals through the use of a laser scanning microscopy system coupled with an infrared excitation light source is an exciting modern imaging method that is enjoying widespread usage in the biomedical sciences. Thus, the present study was undertaken in order to evaluate the use of SHGM microscopy as a means to measure induced cross-linking effects in ex vivo rabbit sclera, following an injection of a chemical cross-linking agent into the sub-Tenon's space (sT), an injection approach that is standard practice for causing ocular anesthesia during ophthalmologic clinical procedures. The chemical cross-linking agent, sodium hydroxymethylglycinate (SMG), is from a class of cosmetic preservatives known as formaldehyde releasing agents (FARs). Scleral changes following reaction with SMG resulted in increases in SHG signals and correlated with shifts in thermal denaturation temperature, a standard method for evaluating induced tissue cross-linking effects.
Progressive myopia is postulated to be treatable through non-enzymatic scleral cross-linking (photochemical and/or chemical), which makes sense given that blocking collagen enzymatic cross-linking can increase experimental form deprivation (FD)-induced myopia1. Elsheikh and Phillips2 recently discussed the feasibility and potential of using standard ultraviolet-A irradiation (UVA)-riboflavin mediated photochemical cross-linking (also known as the Dresden protocol), abbreviated here as (riboflavin CXL) for posterior scleral stabilization to halt axial elongation in myopia. This photochemical method has been successfully used for treating destabilization of the anterior globe surface (i.e., the bulging cornea) seen in keratoconus and post-LASIK keratectasia. However, application of this CXL protocol for the sclera is hindered by issues related to difficulties in accessing the posterior sclera with an ultraviolet (UV) light source, as well as the need to modify a much greater tissue surface area. That being said, the CXL approach has been used to halt axial elongation in visually form deprived rabbits (by tarsorrhaphy), although multiple regions of posterior sclera required multiple separate irradiation zones in that study3. By contrast, injection of a chemical stabilizing agent (i.e., cross-linking agent) via the sT space could represent a simpler way to modify the posterior sclera, avoiding the need for introducing a UV light source. This injection technique is well known as a useful way of inducing ocular anesthesia during ophthalmologic procedures such as cataract surgery4,5,6. Wollensak7 has described previously the use of an sT injection using glyceraldehyde (a chemical cross-linking agent similar in concept to the formaldehyde releasing agents (FARs) described in this study) to stiffen the rabbit sclera and genipin has been shown to limit axial length in FD guinea pigs8,9. These investigators have demonstrated a clear advantage of using a soluble chemical agent over the photochemical CXL technique. Thus, scleral cross-linking using an injectable chemical agent of some type, including the FARs (i.e., TXL)10, could provide a feasible treatment method to halt the progression of scleral elongation seen in myopia.
In the protocols presented here, we use a chemical cross-linking solution of sodium hydroxymethylglycinate (SMG), delivered via sT injection to the sclera of cadaveric rabbit eyes. We have implemented similar protocols previously for topical chemical cross-linking in the cornea. Notably in those previously reported studies, concentration dependent cross-linking effects could be obtained using SMG, with an effect range spanning well above that achievable with photochemical CXL as determined by thermal denaturation analysis11.
Here we describe protocols to assess the cross-linking effect of SMG delivered via sT injections to scleral tissue, thermal denaturation using Differential Scanning Calorimetry (DSC), and Second Harmonic Generation Microscopy (SHGM).
Using differential scanning calorimetry (DSC), also known as thermal analysis, a thermal denaturation transition is measured, which for scleral tissue is predominately guided by the properties of the fibrillar collagens, since they constitute the bulk majority of protein. This method evaluates the stability of collagen molecular structure and the cross-linked bonds that stabilize the collagen fibrils, the principal tertiary protein structure. During heating in the DSC, a critical transition temperature is achieved that results in denaturation of the collagen molecule, resulting in uncoiling of the triple helix, a process that forms what is commonly known as gelatin. This thermal denaturation disrupts hydrogen bonds along the collagen molecule and can be shifted to higher temperatures through induced cross-linking methods12,13. This method has been used for many decades, particularly in the biomaterials industry and for processes that include leather-making. However, this method requires extraction of the sclera tissue and therefore can only be useful as an ex vivo technique.
Second-harmonic generation microscopy (SHGM) is based on the non-linear optical properties of particular materials, with non-centrosymmetric molecular environments. In such materials, intense light, for example light produced by lasers, generates SHG signals, in which the incident light is doubled in frequency. Biological materials that are known to create SHG signals are collagen, microtubules, and muscle myosin. For example, collagen excited with an infrared light of 860 nm wavelength will emit an SHG signal in the visible range with 430 nm wavelength. Second harmonic generation (SHG) signal imaging is a promising method for evaluating therapeutic collagen cross-linking. It has been known for more than 30 years that collagen fibrils in tissues emit SHG signals14. However, only recently could high resolution images be obtained15 in a variety of tissues, including tendon16, skin, cartilage17, blood vessels18, and in collagen gels19.
Based on this knowledge, this study evaluates the SHG signal changes induced in the sclera through SMG chemically induced cross-linking of collagen. The results indicate that SMG modification of the sclera increases the SHG signals produced from tissue collagen fiber bundles (the higher order quaternary structure comprised of collagen fibrils) and also produces a structural morphologic change in the collagen fiber network, reflected in fiber bundle "straightening."
All procedures were performed using cadaveric rabbit eyes within intact outbred rabbit heads. All Institutional and National guidelines for the care and use of laboratory animals were followed.
1. Preparation of Solutions
2. SubTenon's Injection for TXL using SMG
3. Tissue Preparation
4. For Regional DSC Analysis
5. For SHG Imaging
6. Microscopy Protocol
NOTE: This protocol for imaging back-scattered SHG signal from collagen of sclera tissue is tailored for the laser scanning microscope.
7. DSC Protocol
Note: Proceed to this step as soon as tissue preparation is complete, for regional DSC analysis, or after tissue imaging when SHGM is performed.
8. Image Analysis
Thermal denaturation temperature (Tm) as an assay method to evaluate TXL cross-linking effect: A total of 16 pairs of rabbit eyes were used in these experiments for the TXL procedure.As an initial part of this study, the localization of cross-linking effect induced by a single injection of SMG cross-linking agent via sT space in the cadaveric rabbit head was evaluated. This type of experiment has relevance to the clinical treatment of patients, since injections in more than one location could be necessary to stabilize a desired area of sclera.
As would be predicted based on basic diffusivity principles, the effect was greatest at the site of injection with effects induced in adjacent regions as well, depending on the concentration of the solutions. Figure 1A represents the schematic location of scleral sectors (1-4 in red hollow number font) (further divided into squares (1-16 in black thin number font)) that underwent separate thermal denaturation analysis following a single sT injection with color mapping index. Table 1 shows the change in Tm values for each numbered sector as compared to its corresponding control. Values are included for both 40 mM and 400 mM injections and include standard error of the mean calculated for a minimum of three independent determinations.
Figures 1B-C represent the results using two different concentrations of SMG, 40 mM (Figure 1B) and 400 mM (Figure 1C). In Figure 1B, the lower concentration 40 mM sample showed a mild shift in Tm which was noted in square 2 (the injection site). Similar shifts were seen in adjacent squares 1 and 3 (lighter blue). Marginal shifts are seen in squares 4 to 6 and 7 to 9 without statistically significant differences from the injected square. No Tm shift was seen in the lower squares 14 to 16, which represented the most distant sector away from the injection site.
As shown in Figure 1C, the higher concentration (400 mM) had a statistically highly significant cross-linking effect (indicated as shades of orange). A large shift in Tm with associated small standard deviation and p< 0.05 were observed, reflecting a large difference in the effect of the 400 mM compared to lower 40 mM concentration. The most dramatic effects were noted in sector 1 in the upper globe. With regard to the remaining sectors, a lesser effect was observed in squares 10 and 14 (which may have been due to some tracking of cross-linking fluid posteriorly) and no effect was observed in squares 11, 12, 13, 15, and 16. Overall, the cross-linking effects were marginal in sectors 2 and 3 with no effect observed in sector 4 (i.e., the most distant location from the injection site), similar to the 40 mM sample. These results indicated that there was a ''zone of effect'' and that this type of pattern could be expected following a sT injection of cross-linking agent. This could indicate the need for injection in several locations in order to induce effects over a wide area of tissue.
Study of the cross-linking effects induced in intact eyes evaluating TXL with two concentrations of SMG was also performed. Thermal denaturation analysis of tissue that underwent such scleral cross-linking was performed. Cross-linking time was 3.5 h for TXL using three different concentrations, 40 (Tm=1.11+/-1.2), 100 (Tm=5.12+/-2.9), and 400 (Tm=14.34+/-1.1) mM SMG. The results showed that there is a concentration dependent effect seen in SMG cross-linked tissue.
Second harmonic generation (SHG) imaging as a method to evaluate TXL cross-linking effect:
SHG microscopy images were analyzed both for pixel intensity of the SHG signal and fiber bundle waviness. A wide span of cross-linking concentrations (from 40 to 400 mM) was used in order to explore the SHG signal changes that may occur over a wide range of cross-linking effects. Using the histogram analysis capability included in the Fiji image processing program20, it was possible to quantitate the SHG signal produced in scleral tissue by sT injection, comparing the effects at 40 mM to those induced using 400 mM. The average difference in mean pixel intesities at 40 mM were 66.3 ± 27.7 compared to 361.4 ± 28.3 for the 400 mM samples, a nearly 6-fold increase. This corresponds with an increase in tissue cross-linking, since corresponding increases in Tm also were noted under these conditions. Figure 2 shows representative SHG images of sclera taken from control (Figure 2A), 40 mM (Figure 2B), and 400 mM (Figure 2C). The accompanying histogram analysis, including mean brightness (or pixel intensity) is also shown. The total number of images analyzed was: 120 for 40 mM and 98 for its control; 121 for 400 mM and 94 for its own control. The depth of tissue imaging was 10 to 15 µm from the episcleral surface. The results of the histogram analyses, which involved the averaging of numerous image fields, indicated that higher concentrations of cross-linking effect (Figure 3) produced greater pixel intensities.
As shown in Figure 4, an image analysis was also performed with methods adopted from the cardiovascular blood vessel literature, using the ImageJ plugin ''Neuron J''21. We estimated the waviness factor W=Length[curve]/Length[linear] and we observed that cross-linking resulted in straightening of fiber bundles as indicated by a decreased waviness % in 40 mM and 400 mM cross-linked sclera versus untreated control sclera (W%=(W[SMG]-1)/(W[control]-1), Table 2). The difference in waviness between 40 and 400 mM SMG treated samples was not statistically significant.
Figure 1: Localization of TXL effect via sT injection using 40 and 400 mM SMG.
(A) Schematic representation of 4 scleral sectors (numbers 1-4 in large red hollow font), with sclera divided into squares [numbers 1-16 in smaller black thin font] (not drawn to scale) that underwent thermal analysis. The injection site corresponded to the centrally located square (square 2) in sector 1. The thermal denaturation cross-linking effect of TXL with (1B) 40 mM SMG and (1C) 400mM SMG. (D) Color coded temperature scale legend for (B) and (C). This figure has been modified from Zyablitskaya et al. with permission22. Please click here to view a larger version of this figure.
Figure 2: Representative images of concentration dependent increases in SHG signal brightness levels produced following TXL using SMG via sT injection of sclera ex vivo. Concentrations of SMG are shown as (B) 40mM and (C) 400mM. Each image contains a 50 µm scale bar (right lower corner) and mean pixel intensity value (right upper corner) - absolute values. This figure has been modified from Zyablitskaya et al. with permission22. Please click here to view a larger version of this figure.
Figure 3: Bar chart of the change (Δ) in SHG signal pixel intensity (as compared to a paired control from the same rabbit head) in scleral intact globes cross-linked via sT injection (TXL) with 40 and 400 mM SMG solutions. Average values with standard error of the mean were: 66 ± 27.7 for 40 mM and 361 ± 28.3 for 400 mM. This figure has been modified from Zyablitskaya et al. with permission22. Please click here to view a larger version of this figure.
Figure 4: Example of fiber waviness analysis (as expressed by linearity). Image of control sample for 40 mM SMG concentration with a 50 µm scale bar (right lower corner). This figure has been modified from Zyablitskaya et al. with permission22. Please click here to view a larger version of this figure.
Figure 5: Schematic representation of sT injection. Areas numbered 1-3 correspond to areas represented in the Figure 1A. Please click here to view a larger version of this figure.
±Δ Tm | ||
area | 40mM | 400mM |
1 | 3.4 ±2.8 | 20.5 ±0.6 |
2 | 3.4 ±0.53 | 19.58 ±1.5 |
3 | 2.5 ±2.47 | 17.99 ±3.06 |
4 | 0.72 ±0.9 | 20.36 ±0.19 |
5 | 0.85 ±0.55 | 19.11 ±1.33 |
6 | 0.52 ±1.35 | 18.66 ±4.1 |
7 | 0.78 ±1.6 | 18.44 ±2.8 |
8 | 0.56 ±0.9 | 17.77 ±2.69 |
9 | 0.22 ±0.6 | 18.92 ±2.6 |
10 | 0.46 ±0 | 8.75 ±10.56 |
11 | 0.47 ±0.18 | 0.63 ±1.84 |
12 | 0.11 ±0.08 | 0.66 ±1.52 |
13 | 0.08 ±0.05 | 0.71 ±2.17 |
14 | 0.22 ±0.7 | 5.71 ±0.29 |
15 | 0.32 ±0.2 | 0.29 ±0.7 |
16 | 0.24 ±0.73 | 0.26 ±0.79 |
Table 1: DSC results for localization of TXL effect study. Change in thermal melting temperatures (ΔTm) with standard errors for each sampled sector is as depicted in Figure 1A. Each value is expressed as the difference in Tm ascompared to its paired control and is an average of a minimum of 3 independent determinations.
SMG, mM | Waviness | Waviness-% | t-test vs. [0 mM SMG] |
0 | 1.106 ± 0.044 | 100 | |
40 | 1.067 ± 0.017 | 63 | p < 0.02 |
400 | 1.059 ± 0.009 | 55 | p < 0.003 |
Linear fibers | 1.000 | 0 | |
(Theoretical) |
Table 2. Results of fiber waviness analysis. SHG images from the area of TXL injection were analyzed for degree of fiber waviness using Neuron J software. Ten fibers were selected from each image and a total of approximately 100 fibers were analyzed for degree of waviness. Average values with standard error of the mean are included.
Conducted experiments have shown evidence supporting the use of SHG signal microscopy as a method for evaluation of collagen cross-linking effects in sclera, raising the future possibility of using this technique as a monitoring tool for cross-linking treatments that target collagen proteins. Of note, an instrument already is in clinical use that can potentially capture this SHG signal. Although this instrument was primarily designed for imaging skin human dermis, it has been used successfully to image cornea and sclera23.
It is necessary to maintain identical scanning and imaging conditions when comparing control and treated samples. Second harmonic generation microscopy of collagen in sclera tissue requires a fluorescence microscope compatible with multi-photon imaging, a pulsed infrared laser tunable in the 800-900 nm wavelength range, and a highly sensitive detector such as the GaAsP non-descanned (NDD) detectors. Guidelines described in this manuscript are a starting point. The conditions should be determined specifically for the new experiments or for the different systems.
The cornea and sclera also have been evaluated concurrently in studies using this technique24,25,26,27. Knowing that the SHG signal propagates in both forward and backward directions, several studies have examined corneal tissue independently in its native state28,29,30,31,32,33,34 and in keratoconus35,36 as well as following CXL (as discussed below). The results of these studies indicate that the corneal signal is optimized in the forward scattered direction, which makes sense given the cornea's transparency and the fact that light passes through the tissue to strike a monitor in forward scattered systems. Typically, the SHG signal is in the blue visible range and will be greatly reduced when passing through a highly scattering tissue like the eye sclera. As a result, detection of the forward scattered SHG would require a thin section of tissue of 50 μm or less in thickness, as well as a special optical set-up. In contrast, the back-scattered signal can be captured through the regular light path of a fluorescence microscope without tissue sectioning and therefore this mode is preferred when imaging collagen in intact sclera tissue to a depth of 30-40 μm. In this study, we noted a concentration dependent increase in signal density. It is quite possible, however, that the TXL might have had additional and similar effects on deeper layers of the sclera, and that the effect could be more pronounced and extend to deeper layers particularly with the higher concentration. However, due to the limited SHG signal penetration in the sclera and for the purposes of this initial study, we chose to work with the best quality images, which were obtained from the most superficial sclera (15 µm depth). In future studies, we will consider depth dependent effects following TXL methods as this may provide additional important information as to why even greater differences were not observed between 40 and 400 mM treated samples.
Furthermore, regarding the use of SHG for evaluating riboflavin CXL induced tissue cross-linking, SHG microscopy imaging following riboflavin CXL of the cornea have been reported by several groups37,38,39,40,41. In a study by Steven et al.37, corneal stabilization using the CXL technique resulted in a ''homogenization'' of signal and loss of tissue ''folds'' or ''undulations'' seen in non-cross-linked samples. These types of changes, however, also were noted in a study evaluating the effects of changes in IOP on corneal SHG signals, raising the possibility of technical artefacts. Organizationally from the fibril as well as the higher order fiber bundle/lamellar organization standpoint, the sclera and cornea are quite different and much is known about such differences from electron microscopy studies.The two tissues differ with regard to fibril packing, which includes fibril diameter distribution (small uniform fibrils for the cornea and variable diameter fibrils for the sclera) and inter-fibril spacing (uniform for cornea and variable for sclera). As well, the higher order organization into lamellar sheets (cornea) versus fiber bundles (sclera) is quite different. Such structural differences are reflected in the SHG signals produced by these two tissues. Thus, changes induced by cross-linking may alter the SHG signal in different but parallel ways. In other words, the ''straightening'' of fibers in the sclera observed in this study, and the ''homogenization'' of signal in the cornea reported in the literature, were both the result of collagen cross-linking modification. Thus, the ''homogenization'' effect in the cornea could in some way be analogous to the ''straightening'' effect of the sclera that has been reported here.
The mechanisms that result in this straightening effect produced by TXL are unclear based on the current study. One possibility could be that the tissue was somehow ''fixed'' in a mechanically ''loaded'' position.This would support the notion that induced ''fibril and fiber stabilization'' had occurred. Changes in intraocular pressure likely did not contribute to this effect since IOP was monitored prior to and following the sT injection and remained stable. Overall, the significance of these observations are unclear and further studies will be necessary. Of note, separate imaging techniques such as Brillouin microscopy42, which has been shown to provide quantitative measures of cross-linking (as determined by shear modulus) following CXL photochemistry may be useful in confirming the findings with SHG imaging in this study. However, it should be noted that its use with highly scattering tissues such as the sclera43, requires technical modifications and has not been validated with cross-linked scleral tissue.
Laser polarization and SHG microscopy is an important issue. The laser light is linearly polarized and oriented perpendicular to the direction of SHG signal propagation and at some angle in the xy-plane to each collagen fiber. Thus, fibers in the xy-plane that are well aligned and exactly perpendicular to the polarized laser light will produce a higher SHG signal than those at other angles, including those parallel to the incident light (i.e., z-plane), which will produce the lowest SHG signal (due to destructive interference). With respect to sclera tissue, collagen fibers are oriented at various angles on a microscopic level, although preferred anatomic fiber orientations are known to exist based on globe location. Thus, since the SHG signal produced will vary depending on the xy-plane angle of each fiber, the overall signal will be less than that which would be produced if all the collagen fibers were exactly aligned at the same angle (in a tissue such as a tendon, for example). Thus, in this study, due to the nature of the sample being imaged, the direction of polarization was not intentionally determined but was kept consistent throughout the study. Furthermore, we took care to obtain tissues from treated and control globes from identical scleral regions, minimizing any differences in fiber orientation between samples. Finally, we analyzed over 100 images per sample in order to obtain intensity values. This extensive evaluation should have normalized any aberrant SHG signals that may have been registered. That being said, it is possible that as a result of the "fiber straightening" that we observed in the cross-linked samples (described above), a greater proportion of "in focal plane" fibers could have contributed to the increase in the SHG signal as well as increased SHG signals from greater xy-plane alignment. Both of these possibilities would be manifestations of induced cross-linking effects.
A regional analysis of cross-linking changes (by Tm) induced by an sT injection of SMG was performed. As expected, the level of cross-linking effect was concentrated in the area of the injection. Little or no cross-linking effect was noted in the region directly opposite (furthest away) from the injection, consistent with what is known regarding localization of effect following sT injection as shown by ultrasound localization44,45 and computed tomography46.
Finally, regarding cross-linking therapy and myopia, collagen cross-linking of the cornea is finding widespread use in the treatment of corneal destabilization including keratoconus, post LASIK keratectasias, pellucid marginal degeneration (PMD), and as an adjunct to refractive surgical procedures47. The success of treating corneal disease with cross-linking has led to the exploration of applying this treatment approach to the back of the eye and, in particular, the sclera, for limiting axial elongation in high myopia2, a concept that goes back to the very earliest stages of the therapeutic cross-linking concept48,49.
The authors have nothing to disclose.
The authors thank Tongalp Tezel, MD, for consultation regarding sT injection; Theresa Swayne, PhD, for consultation regarding SHG microscopy; and Jimmy Duong from the Design and Biostatistics Resource and the Biostatistical core facility of the Irving Institute at Columbia University Medical Center.
Supported in part by Research to Prevent Blindness and by National Institutes of Health Grants NCRR UL1RR024156, NEI P30 EY019007, NCI P30 CA013696, and NEI R01EY020495 (DCP). Columbia University owns related intellectual property: US issued patents no: 8,466,203 and no: 9,125,856. International patent pending: PCT/US2015/020276.
Images were collected in the Confocal and Specialized Microscopy Shared Resource of the Herbert Irving Comprehensive Cancer Center at Columbia University, supported by NIH grant #P30 CA013696 (National Cancer Institute). The confocal microscope was purchased with NIH grant #S10 RR025686.
Name | Company | Catalog Number | Comments |
MILLI-Q SYNTHESIS A10 120V | EMD Millipore, Massachusetts, USA | Double distilled, deionized water. - protocol step 1.1.1 | |
Sodium hydroxymethylglycinate | Tyger Chemicals Scientific, Inc. Ewing, NJ, USA | Crosslinking reagent - protocol step 1.1.2 | |
Injection needle with luer-lock syringe | BD Eclipse, NJ, USA | Syringe for sub tenon injection. - protocol step 2.1 | |
Rabbit head | La Granja poultry | Outbred | Rabbit head separated and delivered within 1 hour postmortem. - protocol step 2.2 |
Tono-pen | Reichter Technologies Depew, NY | IOP measurements - protocol step 2.4 | |
DSC 6000 Autosampler | Perkin-Elmer Waltham, MA, USA | Thermal denaturation analyzer - protocol step 7.4 | |
Pyris software | Perkin-Elmer, Waltham, MA, USA | Ver 11.0 | protocol step 7.5 |
CFI75 Apochromat LWD 25X/1.10 W MP | Nikon Instruments, Melville, NY, USA | A water immersionn objective with high IR transmittance with a working distance of 2.0 mm - protocol step 8.1.1. | |
GenTeal | Alcon, Fort Worth, TX | B000URVDQ8 | Water-based gel used as objective immersion medium instead of water to prevent evaporation - 8.1.1 |
Chameleon Vision II | Coherent, Santa Clara,CA, USA | Ti:Sapphire pulsed laser with a 140 fs pulse width at 80 MHz and a tunable range from 680 nm to 1080 nm. - protocol step 8.1.11 | |
AttoFluor cell chamber | Thermo Fisher Scientific Inc | A7816 | Fixation of the cover slip - protocol step 8.1.3 |
25-mm round coverslips, #1.5 | Neuvitro Corporation, Vancouver, WA, USA | GG-25-1.5 | protocol step 8.1.3 |
Eclipse Ti-E | Nikon Instruments, Melville, NY, USA | protocol step 8.1.4. | |
Non-descanned (NDD) GaAsP detector | Nikon Instruments, Melville, NY, USA | Equipped with a 400-450 nm band pass filter - protocol step 8.1.7 | |
A1R-MP laser scanning system | Nikon Instruments, Melville, NY, USA | Compatible with infrared (IR) multi-photon excitation. - protocol step 8.1.8 | |
NIS Elements software | Nikon Instruments, Melville, NY, USA | Ver 4.3 | refered to as "software" in the text - protocol step 8.1.9 |
Fiji/ImageJ | National Institute of Health | protocol step 9.1.2 | |
NeuronJ | Eric Meijering, Erasmus University Medical Center, Rotterdam, The Netherlands | https://imagescience.org/meijering/software/neuronj/, for protocol step 9.2.2 | |
Microsoft Excel | Microsoft Corporation, Redmond, WA, USA | Ver 14 | protocol step 9.2.8 |
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