Special thanks to the St. Regis Mohawk Environmental Division, Welaka National Fish Hatchery, US Fish and Wildlife Service Research Unit, Southern Illinois University, US Fish and Wildlife Service Northeast Fisheries Center, Sterling Caviar, University of California-Davis, Garrison Dam National Fish Hatchery, Bears Bluff National Fish Hatchery, and US Fish and Wildlife Service Panama City Fisheries Resource Office for their help supplying sturgeon for this project.&#160;This article is Contribution 2013 of the USGS Great Lakes Science Center.

Important Note: Due to the protected status of all species of sturgeon in the United States, permits to acquire and handle fish were obtained prior to laboratory procedure. All specimens were acquired from hatchery sources post mortem due to natural causes and disposed of following standard procedure.
1. Specimen Preparation
<ol>
	<li>Before any incisions lay sturgeon carcass on its side and using a measuring tape to measure total length from the snout to the tip of the tail to the nearest 1 mm. (Figure 1A)</li>
	<li>Weigh sturgeon carcass on a tared scale to the nearest 1 g. Evaluate carcass for any external tags or marks and record.</li>
</ol>
2. Otolith Extraction
<ol>
	<li>Make a vertical incision with a large fillet knife between the base of the skull and the first dorsal scute through the body to separate the head from the body (Figure 1B). After removing the head, turn the head so the mouth is facing up (Figure 1C).</li>
	<li>Remove soft tissue of the mouth and gills by using the fillet knife to cut along the ventral side of the skull (Figure 1D). Make an incision with an electric bone saw from the tip of the snout to the base of the skull to completely bisect the head (Figure 1E). Separate the two halves by hand to expose the brain cavity (Figure 2A).</li>
	<li>Remove and discard brain matter (Red box left) with forceps to view semicircular canals (Red box right) within the brain cavity (Figure 2B).</li>
	<li>Remove semicircular canal cartilage from brain cavity with forceps (Figure 2C). Carefully puncture semicircular canal cartilage with the tip of the forceps and remove otolith (Figure 2D). Remove the otolith (hard bony structure inside the cartilage) with forceps from the semicircular canal cartilage (Figure 2E).</li>
	<li>Repeat steps 2.3 - 2.4 to remove otolith from the other half of the skull.</li>
	<li>Dip the otoliths in 92% Ethanol for 5 sec to remove any cartilage. Place otoliths in an open 25 ml scintillation vial to dry for 24 hr.</li>
</ol>

<ol><li>Auer, N. A. Conservation. <a target="_blank" href="http://scholar.google.com/scholar?hl=en&safe=off&q=author%3aAuer%2C+NA+%22Sturgeons+and+Paddlefish+of+North+America%22">Sturgeons and Paddlefish of North America</a>. LeBreton, G. T. O., Beamish, F. W. H., McKinley, R. S. 27, Kluwer Academic Publishers. 252-276 (2004).</li>
<li>Sturgeon Specialists Group, sturgeon conservation. IUCN (International Union for the Conservation of Nature). , Source: 
 <a target="_blank" href="www.iucn.org">www.iucn.org</a> (2008).</li>
<li>Campana, S. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/pubmed?term=((Accuracy%2C+precision+and+quality+control+in+age+determination%2C+including+a+review+of+the+use+and+abuse+of+age+validation+methods%29%5BTitle%5D)+AND+%22Journal+of+Fish+Biology%22%5BJournal%5D)">Accuracy, precision and quality control in age determination, including a review of the use and abuse of age validation methods).</a> Journal of Fish Biology. 59, 197-242 (2001).</li>
<li>Bruch, R. M., Campana, S. E., Davis-Foust, S. L., Hansen, M. J., Janssen, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/pubmed?term=((Lake+Sturgeon+age+validation+using+bomb+radiocarbon+and+known-age+fish%5BTitle%5D)+AND+%22Transactions+of+the+American+Fisheries+Society%22%5BJournal%5D)">Lake Sturgeon age validation using bomb radiocarbon and known-age fish.</a> Transactions of the American Fisheries Society. 138, 361-372 (2009).</li>
<li>Baremore, I. E., Rosati, J. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/pubmed?term=((A+validated%2C+minimally+deleterious+method+for+ageing+sturgeon%5BTitle%5D)+AND+%22Fishery+Bulletin%22%5BJournal%5D)">A validated, minimally deleterious method for ageing sturgeon.</a> Fishery Bulletin. 112, 274-282 (2014).</li>
<li>Stevensen, J. T., Secor, D. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/pubmed?term=((Age+determination+and+growth+of+Hudson+River+Atlantic+sturgeon%2C+Acipenser+oxyrhynchus%5BTitle%5D)+AND+%22Fishery+Bulletin%22%5BJournal%5D)">Age determination and growth of Hudson River Atlantic sturgeon, Acipenser oxyrhynchus.</a> Fishery Bulletin. 97, 153-166 (1999).</li>
<li>Brennan, J. S., Cailliet, G. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/pubmed?term=((Comparative+age-determination+techniques+for+white+sturgeon+in+California%5BTitle%5D)+AND+%22Transactions+of+the+American+Fishery+Society%22%5BJournal%5D)">Comparative age-determination techniques for white sturgeon in California.</a> Transactions of the American Fishery Society. 118, 296-310 (1989).</li>
<li>Rossiter, A., Noakes, D. L. G., Beamish, F. W. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/pubmed?term=((Validation+of+age+estimation+for+the+lake+sturgeon%5BTitle%5D)+AND+%22Transactions+of+the+American+Fisheries+Society%22%5BJournal%5D)">Validation of age estimation for the lake sturgeon.</a> Transactions of the American Fisheries Society. 124, 777-781 (1995).</li>
<li>Chalupnicki, M. A., Dittman, D. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/pubmed?term=((North+American+Sturgeon+Otolith+Morphology%5BTitle%5D)+AND+%22Copeia%22%5BJournal%5D)">North American Sturgeon Otolith Morphology.</a> Copeia. , 260-266 (2016).</li>
<li>Secor, D. H., Dean, J. M., Laban, E. H. <a target="_blank" href="http://scholar.google.com/scholar?hl=en&safe=off&q=author%3aSecor%2C+DH+%22Manual+for+otolith+removal+and+preparation+for+microstructural+examination%22">Manual for otolith removal and preparation for microstructural examination</a>. , Barach Press. Columbia, South Carolina. (1991).</li>
</ol>

Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

The overview of an alternative method of extracting otoliths from sturgeon carcasses has been detailed. It is important to note that special attention is needed to the lateral incision placement on the midline of skull in order to bisect the skull evenly to ensure no harm to the otoliths during dissection. If the incision is not deep enough to completely bisect the skull it will be very difficult to expose the brain cavity where the location of the otoliths is clearly visible. With experience, the overall technique is relatively simple and leads to a high percentage of the otoliths being found intact. This new method gives researches an alternative way to extract otoliths for species other than sturgeon that may be difficult using standard otolith extraction methods.
Limitations to this method are the applicability to a laboratory setting not for field use. The time needed for carcass preparation is not conducive to samples collected in the field in a timely manner. Another concern is the use on sturgeon species that are typically protected under state or federal law due to population declines.
It is very difficult to obtain permits to conduct this type of evaluation at the expense of sacrificing individuals that are needed to keep populations alive. However, when dead specimens are available through natural causes this technique provides a useful way to collect more information than would be available otherwise.
It is important to note the significance of this technique to successfully remove otoliths from sturgeon using this alternative method. Existing techniques removing otoliths from the dorsal region of the head are still useful and beneficial but not applicable for sturgeon. Using this new technique to expose the brain cavity also gives access and applicability to other areas neural function and brain morphology. This new technique may be beneficial to use on other species of fish with very thick skull walls or where there is a limited amount of fish to use for otolith extraction.

Sturgeon (Acipenseridae) populations throughout the world have been declining for over a century due to impacts including habitat loss, population fragmentation, and overfishing such that many populations are protected by state and federal laws1,2. Management agencies throughout the USA and the world have identified sturgeon as a target species for restoration and recovery1. Population characteristics (growth, recruitment, diet) of most sturgeon populations have been studied to better understand basic biology and life history characteristics1. Due to the protected status of most sturgeon populations, age evaluation is difficult in small threatened populations where no sacrifice or harm to individuals is warranted.
The extraction of bony structures for the purpose of age estimation and growth analysis has been a common technique3.The use of fin ray sections to determine age of sturgeon has become a practical nonlethal method, but verification of the technique has been limited and age can be very difficult to decipher in older individuals (&#62; 15 years)4. Researchers evaluating the use of multiple bony structures in sturgeon for their use in validating the age of Gulf Sturgeon (Acipenser oxyrinchus desoti)5, Atlantic Sturgeon (A. o. oxyrinchus)6, White Sturgeon (A. transmontanus)7, and Lake Sturgeon (A. fluvescens)8 concluded that the first marginal pectoral fin ray provided the most accurate age but concluded this invasive procedure to be deleterious to larger individuals. &#160;Currently, there is the development of using otolith shape metrics to distinguish between North American sturgeon species with a very high rate of success9. Details on the process of removing the otolith with a dorsal transverse incision at the base of the skull is a common otolith extraction method found throughout the literature and clearly detailed by Secor et al. (1991)10. However, this method is difficult to implement on sturgeon that have very thick skulls with otoliths that are small and delicate and would tend to break. A further review of the literature shows no other detailed methodology of the otolith removal process for sturgeon. The objective of this paper was to detail an alternative method of extracting otoliths from sturgeon by entering the brain cavity from the ventral side.

<table><tbody><tr><td>Measuring Board</td><td></td><td></td><td>Metric meter stick is preferred</td></tr><tr><td>Weighing scale</td><td></td><td></td><td></td></tr><tr><td>Filleting Knife</td><td></td><td></td><td></td></tr><tr><td>Scalpel</td><td></td><td></td><td></td></tr><tr><td>Forceps</td><td></td><td></td><td></td></tr><tr><td>Sample vials</td><td></td><td></td><td>25 ml scintillation vials work well</td></tr></tbody></table>

alternative method of removing otoliths from sturgeon

Extracting the otoliths (ear bones) from fish that have very thick skulls can be difficult and very time consuming. The common practice of making a transverse vertical incision on the top of the skull with a hand or electrical saw may damage the otolith if not performed correctly. Sturgeons (Acipenseridae) are one family in particular that have a very large and thick skull. A new laboratory method entering the brain cavity from the ventral side of the fish to expose the otoliths was easier than other otolith extraction methods found in the literature. Methods reviewed in the literature are designed for the field and are more efficient at processing large quantities of fish quickly. However, this new technique was designed to be more suited for a laboratory setting when time is not pressing and successful extraction from each specimen is critical. The success of finding and removing otoliths using this technique is very high and does not compromise the structure in any manner. This alternative technique is applicable to other similar fish species for extracting the otoliths.

The adult size of sturgeon across the world varies greatly but the location of the otoliths is consistent. The use of a sharp fillet knife was found to remove the soft tissue of the mouth easily shown in Figure 1D. An electric bone saw is the preferred tool for the lateral incision to expose the brain cavity in Figure 1E. However, attention to bisecting the midline of the skull is needed otherwise the otoliths may be crushed during this process. If this process is performed correctly then the brain cavity will be exposed evenly with no damage to the otoliths as shown in Figure 2A. The brain matter is easily removed with the use of forceps as in Figure 2B and finding the semicircular canal cartilage which contains the otolith is easily found at the base of the brain cavity as shown in Figure 2C. The cartilage found in the semicircular canal is easily removed from the otolith with a pair of forceps as viewed in Figure 2D.
This procedure successfully shows the removal of the sturgeon otolith and is a preliminary step in a more quantitative analysis of the fish&#39;s life history.&#160;Outcome success can be gauged by the removal of the otolith without breaking the structure. Age determination and growth rates are two metrics that can be evaluated with the use of the removed otoliths. Shape analysis for species differentiation is another measurable metric that can be developed from the otoliths.
<img alt="Figure 1" src="/files/ftp_upload/54316/54316fig1.jpg" /> 
Figure 1. Placement of Sturgeon Carcass for Otolith Removal. (A) Sturgeon Carcass Lateral View for Measurement and Weighing, (B) Vertical Incision to Separate Sturgeon Head from Body, (C) Flip Head to View Mouth and Ventral Side of Head, (D) Soft Tissue Removed to Expose Ventral Side of Skull,&#160;(E) Lateral Incision from Tip of Snout to Base of Skull <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/54316/54316fig1large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 2" src="/files/ftp_upload/54316/54316fig2.jpg" /> 
Figure 2. Internal Examination of the Brain Cavity to Remove Otoliths.&#160;(A) Brain Cavity Exposed after Head is Separated, (B) Brain Matter Removed to Expose Semicircular Canals, (C) Semicircular Canal Cartilage Removed, (D) Otolith Viewed and Removed from Semicircular Canal Cartilage, (E) Shortnose Sturgeon Otolith <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/54316/54316fig2large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>

Watch this Scientific Journal Video about Alternative Method of Removing Otoliths from Sturgeon at JoVE.com

Alternative Method of Removing Otoliths from Sturgeon

The goal of the protocol is to show an effective method to extract the otoliths from sturgeon carcasses.

Extracting the otoliths (ear bones) from fish that have very thick skulls can be difficult and very time consuming. The common practice of making a ...

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8.4K Views.  Great Lakes Science Center. The goal of the protocol is to show an effective method to extract the otoliths from sturgeon carcasses. 

Video: Alternative Method of Removing Otoliths from Sturgeon

A Time Differential Staining Technique Coupled with Full Bilateral Gill Denervation to Study Ionocytes in Fish

Branchial ionocytes (ICs) are the functional units for ionic regulation in fish. In adults, they are found on the filamental and lamellar epithelia of the gill where they transport ions such as Na+, Cl- and Ca2+ via a variety of ion channels, pumps and exchangers. The teleost gill is extrinsically innervated by the facial (VI), glossopharyngeal (IX) and vagus (X) nerves. The IX and X nerves are also the extrinsic source of branchial IC innervation. Here, two techniques used to study the innervation, proliferation and distribution of ICs are described: a time differential staining technique and a full bilateral gill denervation technique. Briefly, goldfish are exposed to a vital mitochondrion-specific dye (e.g., MitoTracker Red) which labels (red fluorescence) pre-existing ICs. Fish were either allowed to recover for 3 - 5 days or immediately underwent a full bilateral gill denervation. After 3 - 5 days of recovery, the gills are harvested and fixed for immunohistochemistry. The tissue is then stained with an &#945;-5 primary antibody (targets Na+/K+ ATPase containing cells) in conjunction with a secondary antibody that labels all (both new and pre-existing) ICs green. Using confocal imaging, it was demonstrated that pre-existing ICs appear yellow (labelled with both a viable mitochondrion-specific dye and &#945;-5) and new ICs appear green (labelled with &#945;-5 only). Both techniques used in tandem can be applied to study the innervation, proliferation and distribution of ICs on the gill filament when fish are exposed to environmental challenges.

This manuscript describes a protocol to track the re-distribution of branchial ionocytes and their innervation using a time differential staining technique coupled with full bilateral gill denervation.

Branchial ionocytes (ICs) are the functional units for ionic regulation in fish. In adults, they are found on the filamental and lamellar epithelia of the ...

Developmental Biology

A Flow-through Exposure System for Evaluating Suspended Sediments Effects on Aquatic Life

This paper describes the Fish Larvae and Egg Exposure System (FLEES). The flow-through exposure system is used to investigate the effects of suspended sediment on various aquatic species and life stages in the laboratory by using pumps and automating delivery of sediment and water to simulate suspension of sediment. FLEES data are used to develop exposure-response curves between the effects on aquatic organisms and suspended sediment concentrations at the desired exposure duration. The effects data are used to evaluate management practices used to reduce the interactions between aquatic organisms and anthropogenic causes of suspended sediments. The FLEES is capable of generating total suspended solids (TSS) concentrations as low as 30 to as high as 800 mg/L, making this system an ideal choice for evaluating the effects of TSS resulting from many activities including simulating low ambient levels of TSS to evaluating sources of suspended sediments from dredging operations, vessel traffic, freshets, and storms.

A robust and flexible flow-through exposure system designed to maintain sediment in suspension is presented. The system is used to investigate the effects of suspended sediment on various aquatic species and life stages in the laboratory.

This paper describes the Fish Larvae and Egg Exposure System (FLEES). The flow-through exposure system is used to investigate the effects of suspended ...

Necropsy-based Wild Fish Health Assessment

Anthropogenic influences from increased nutrients and chemical contaminants, to habitat alterations and climate change, can have significant effects on fish populations. Adverse effects monitoring, utilizing biomarkers from the organismal to the molecular level, can be used to assess the cumulative effects on fishes and other organisms. Fish health has been used worldwide as an indicator of aquatic ecosystem health. The necropsy-based fish health assessment provides data on visible abnormalities and lesions, parasites, condition and organosomatic indices. These can be compared by site, season and sex, as well as temporally, to document change over time. Severity ratings can be assigned to various observations to calculate a fish health index for more quantitative assessment. A drawback of the necropsy-based assessment is that it is based on visual observations and condition factors, which are not as sensitive as tissue and subcellular biomarkers for sublethal effects. Additionally, it is rarely possible to identify causes or risk factors associated with observed abnormalities. So, for instance a raised lesion or "tumor" on the fins, lips or body surface may be a neoplasm. However, it could also be a response to a parasite, chronic inflammation or hyperplasia of normal cells in response to an irritant. Conversely, neoplasms, certain parasites, other infectious agents and many tissue changes are not visible and so may be underestimated. However, during the necropsy-based assessment, blood (plasma), tissues for histopathology (microscopic pathology), genomics and other molecular analyses, and otoliths for aging can be collected. These downstream analyses, together with geospatial analyses, habitat assessments, water quality and contaminant analyses can all be important in comprehensive ecosystem evaluations.

The health of wild fishes can be used as an indicator of aquatic ecosystem health. Necropsy-based fish health assessments provide documentation of visible lesions or abnormalities, data used to calculate condition indices as well as the opportunity to collect tissues for microscopic evaluation, gene expression and other more in-depth analyses.

Anthropogenic influences from increased nutrients and chemical contaminants, to habitat alterations and climate change, can have significant effects on ...

Modeling the Size Spectrum for Macroinvertebrates and Fishes in Stream Ecosystems

The size spectrum is an inverse, allometric scaling relationship between average body mass (M) and the density (D) of individuals within an ecological community or food web. Importantly, the size spectrum assumes that individual size, rather than species&#8217; behavioral or life history characteristics, is the primary determinant of abundance within an ecosystem. Thus, unlike traditional allometric relationships that focus on species-level data (e.g., mean species&#8217; body size vs. population density), size spectra analyses are &#8216;ataxic&#8217; &#8211; individual specimens are identified only by their size, without consideration of taxonomic identity. Size spectra models are efficient representations of traditional, complex food webs and can be used in descriptive as well as predictive contexts (e.g., predicting responses of large consumers to changes in basal resources). Empirical studies from diverse aquatic ecosystems have also reported moderate to high levels of similarity in size spectra slopes, suggesting that common processes may regulate the abundances of small and large organisms in very different settings. This is a protocol to model the community-level size spectrum in wadable streams. The protocol consists of three main steps. First, collect quantitative benthic fish and invertebrate samples that can be used to estimate local densities. Second, standardize the fish and invertebrate data by converting all individuals to ataxic units (i.e., individuals identified by size, irrespective of taxonomic identity), and summing individuals within log2 size bins. Third, use linear regression to model the relationship between ataxic M and D estimates. Detailed instructions are provided herein to complete each of these steps, including custom software to facilitate D estimation and size spectra modeling.

This is a protocol to model the size spectrum (scaling relationship between individual mass and population density) for combined fish and invertebrate data from wadable streams and rivers. Methods include: field techniques to collect quantitative fish and invertebrate samples; lab methods to standardize the field data; and statistical data analysis.

The size spectrum is an inverse, allometric scaling relationship between average body mass (M) and the density (D) of individuals within an ecological ...

Cortisol Extraction from Sturgeon Fin and Jawbone Matrices

The aims of this study were to develop a technique for the extraction of cortisol from sturgeon fins using two washing solvents (water and isopropanol) and quantify any differences in fin cortisol levels among three main sturgeon species. Fins were harvested from 19 sacrificed sturgeons including seven beluga (Huso huso), seven Siberian (Acipenser baerii), and five sevruga (A. stellatus). The sturgeons were raised in Iranian farms for 2 years (2017-2018), and cortisol extraction analysis was conducted in South Korea (January-February 2019). Jawbones from five H. huso were also used for cortisol extraction. Data were analyzed using the general linear model (GLM) procedure in the SAS environment. The intra- and inter-assay coefficients of variation were 14.15 and 7.70, respectively. Briefly, the cortisol extraction technique involved washing the samples (300 &#177; 10 mg) with 3 mL of solvent (ultrapure water and isopropanol) twice, rotation at 80&#160;rpm for 2.5 min, air-drying the washed samples at room temperature (22-28 &#176;C) for 7 days, further drying the samples using a bead beater at 50 Hz for 32 min and grinding them into powder, applying 1.5 mL methanol to the dried powder (75 &#177; 5 mg), and slow rotation (40 rpm) for 18 h at room temperature with continuous mixing. Following extraction, samples were centrifuged (9,500 x g for 10 min), and 1 mL supernatant was transferred into a new microcentrifuge tube (1.5 mL), incubated at 38 &#176;C to evaporate the methanol, and analyzed via enzyme-linked immunosorbent assay (ELISA). No differences were observed in fin cortisol levels among species or in fin and jawbone cortisol levels between washing solvents. The results of this study demonstrate that the sturgeon jawbone matrix is a promising alternative stress indicator to solid matrices.

In this study, we present a protocol for cortisol extraction from the fin and jawbone of sturgeon species. Fin and jawbone cortisol levels were further examined by comparing two washing solvents followed by ELISA assays. This study piloted the feasibility of jawbone cortisol as a novel stress indicator.

The aims of this study were to develop a technique for the extraction of cortisol from sturgeon fins using two washing solvents (water and isopropanol) ...

Streamlined Sampling and Cultivation of the Pelagic Cosmopolitan Larvacean, Oikopleura dioica

Oikopleura dioica is a planktonic chordate with exceptional filter-feeding ability, rapid generation time, conserved early development, and a compact genome. For these reasons, it is considered a useful model organism for marine ecological studies, evolutionary developmental biology, and genomics. As research often requires a steady supply of animal resources, it is useful to establish a reliable, low-maintenance culture system. Here we describe a step-by-step method for establishing an O. dioica culture. We describe how to select potential sampling sites, collection methods, target animal identification, and the set-up of the culturing system. We provide troubleshooting advice based on our own experiences. We also highlight critical factors that help sustain a robust culture system. Although the culture protocol provided here is optimized for O. dioica, we hope our sampling technique and culture setup will inspire new ideas for maintaining other fragile pelagic invertebrates.

Streamlined Sampling and Cultivation of the Pelagic Cosmopolitan Larvacean, Oikopleura dioica

Oikopleura dioica is a tunicate model organism in various fields of biology. We describe sampling methods, species identification, culturing setup, and culturing protocols for the animals and algal feed. We highlight key factors that helped strengthen the culture system and discuss the possible problems and resolutions.

Oikopleura dioica is a planktonic chordate with exceptional filter-feeding ability, rapid generation time, conserved early development, and a compact ...

Patch Clamp Recordings in Inner Ear Hair Cells Isolated from Zebrafish

Patch clamp analyses of the voltage-gated channels in sensory hair cells isolated from a variety of species have been described previously1-4 but this video represents the first application of those techniques to hair cells from zebrafish. Here we demonstrate a method to isolate healthy, intact hair cells from all of the inner ear end-organs: saccule, lagena, utricle and semicircular canals. Further, we demonstrate the diversity in hair cell size and morphology and give an example of the kinds of patch clamp recordings that can be obtained. The advantage of the use of this zebrafish model system over others stems from the availability of zebrafish mutants that affect both hearing and balance. In combination with the use of transgenic lines and other techniques that utilize genetic analysis and manipulation, the cell isolation and electrophysiological methods introduced here should facilitate greater insight into the roles hair cells play in mediating these sensory modalities.

The purpose of this video is to demonstrate procedures for obtaining healthy, intact hair cells from the inner ear organs of adult zebrafish and then using them for patch clamp studies aimed at characterizing the biophysical properties of their voltage-gated channels.

Patch  clamp analyses of the voltage-gated channels in sensory hair cells isolated  from a variety of species have been described previously1-4 but this  ...

Neuroscience

Quantifying Fish Swimming Behavior in Response to Acute Exposure of Aqueous Copper Using Computer Assisted Video and Digital Image Analysis

Behavioral responses of aquatic organisms to environmental contaminants can be precursors of other effects such as survival, growth, or reproduction. However, these responses may be subtle, and measurement can be challenging. Using juvenile white sturgeon (Acipenser transmontanus) with copper exposures, this paper illustrates techniques used for quantifying behavioral responses using computer assisted video and digital image analysis. In previous studies severe impairments in swimming behavior were observed among early life stage white sturgeon during acute and chronic exposures to copper. Sturgeon behavior was rapidly impaired and to the extent that survival in the field would be jeopardized, as fish would be swept downstream, or readily captured by predators. The objectives of this investigation were to illustrate protocols to quantify swimming activity during a series of acute copper exposures to determine time to effect during early lifestage development, and to understand the significance of these responses relative to survival of these vulnerable early lifestage fish. With mortality being on a time continuum, determining when copper first affects swimming ability helps us to understand the implications for population level effects. The techniques used are readily adaptable to experimental designs with other organisms and stressors.

Measuring the impacts of environmental contaminants on fish behavior is often subjective and challenging particularly when dealing with sublethal endpoints. We describe methods including video technology to quantify swimming behavior of early life stage white sturgeon (Acipenser transmontanus) during and after 96 hr acute exposures to various concentrations of copper.

Behavioral responses of aquatic organisms to environmental contaminants can be precursors of other effects such as survival, growth, or reproduction.  ...

Physiological Preparation of Hair Cells from the Sacculus of the American Bullfrog (Rana catesbeiana)

The study of hearing and balance rests upon insights drawn from biophysical studies of model systems. One such model, the sacculus of the American bullfrog, has become a mainstay of auditory and vestibular research. Studies of this organ have revealed how sensory cells hair can actively detect signals from the environment. Because of these studies, we now better understand the mechanical gating and localization of a hair cell&#39;s transduction channels, calcium&#39;s role in mechanical adaptation, and the identity of hair cell currents. This highly accessible organ continues to provide insight into the workings of hair cells. Here we describe the preparation of the bullfrog&#39;s sacculus for biophysical studies on its hair cells. We include the complete dissection procedure and provide specific protocols for the preparation of the sacculus in specific contexts. We additionally include representative results using this preparation, including the calculation of a hair bundle&#39;s instantaneous force-displacement relation and measurement of a bundle&#39;s spontaneous oscillation.

Physiological Preparation of Hair Cells from the Sacculus of the American Bullfrog Rana catesbeiana

The American bullfrog&#39;s (Rana catesbeiana) sacculus permits direct examination of hair-cell physiology. Here the dissection and preparation of the bullfrog&#39;s sacculus for biophysical studies is described. We show representative experiments from these hair cells, including the calculation of a bundle&#39;s force-displacement relation and measurement of its unforced motion.

The study of hearing and balance rests upon insights drawn from biophysical studies of model systems. One such model, the sacculus of the American ...

Dissection and Flat-mounting of the Threespine Stickleback Branchial Skeleton

The posterior pharyngeal segments of the vertebrate head give rise to the branchial skeleton, the primary site of food processing in fish. The morphology of the fish branchial skeleton is matched to a species' diet. Threespine stickleback fish (Gasterosteus aculeatus) have emerged as a model system to study the genetic and developmental basis of evolved differences in a variety of traits. Marine populations of sticklebacks have repeatedly colonized countless new freshwater lakes and creeks. Adaptation to the new diet in these freshwater environments likely underlies a series of craniofacial changes that have evolved repeatedly in independently derived freshwater populations. These include three major patterning changes to the branchial skeleton: reductions in the number and length of gill raker bones, increases in pharyngeal tooth number, and increased branchial bone lengths. Here we describe a detailed protocol to dissect and flat-mount the internal branchial skeleton in threespine stickleback fish. Dissection of the entire three-dimensional branchial skeleton and mounting it flat into a largely two-dimensional prep allows for the easy visualization and quantification of branchial skeleton morphology. This dissection method is inexpensive, fast, relatively easy, and applicable to a wide variety of fish species. In sticklebacks, this efficient method allows the quantification of skeletal morphology in genetic crosses to map genomic regions controlling craniofacial patterning.

The branchial skeleton, including gill rakers, pharyngeal teeth, and branchial bones, serves as the primary site of food processing in most fish. Here we describe a protocol to dissect and flat-mount this internal skeleton in threespine sticklebacks. This method is also applicable to a variety of other fish species.

The posterior pharyngeal segments of the vertebrate head give rise to the branchial skeleton, the primary site of food processing in fish. The morphology ...

Alternative Method of Removing Otoliths from Sturgeon

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A Flow-through Exposure System for Evaluating Suspended Sediments Effects on Aquatic Life

Necropsy-based Wild Fish Health Assessment

Modeling the Size Spectrum for Macroinvertebrates and Fishes in Stream Ecosystems

Cortisol Extraction from Sturgeon Fin and Jawbone Matrices

Streamlined Sampling and Cultivation of the Pelagic Cosmopolitan Larvacean, Oikopleura dioica

Patch Clamp Recordings in Inner Ear Hair Cells Isolated from Zebrafish

Quantifying Fish Swimming Behavior in Response to Acute Exposure of Aqueous Copper Using Computer Assisted Video and Digital Image Analysis

Physiological Preparation of Hair Cells from the Sacculus of the American Bullfrog (Rana catesbeiana)

Dissection and Flat-mounting of the Threespine Stickleback Branchial Skeleton