אנו מודים: ניקולא Gompel ובנימין Prud&#39;homme על תרומתם לפיתוח של פרוטוקול זה; מליסה וויליאמס וארבעה בודקים אנונימי הערות על כתב היד; של אוניברסיטת דייטון בוגר בית הספר עבור מלגות מחקר מלחמה; של אוניברסיטת דייטון ביולוגיה מחלקת מכון המחקר (UDRI) תמיכה מחקר TMW. עבודה זו נתמכה על ידי איגוד הלב האמריקאי גרנט 11BGIA7280000 כדי TMW.

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אין לנו שום דבר לגלות.

cis-הרגולציה אלמנטים לקודד את התוכנית גנומית המציין דפוסי ביטוי גנים ועל ידי כך את תהליך הפיתוח 1, הם מקומות בולטים הן מוטציות הבסיסית באבולוציה מורפולוגית 2-4 ו וריאציה פנוטיפי עבור תכונות אנושיות 5,6,19. למרות חשיבות זו, ההיגיון הרגולציה צרס להישאר ממעטים להבין. סיבה בולטת של הגרעון הבנה זו כבר חוסר שיטות מתאים כמותית להשוות רצפי תפקודית של צרס. כאן אנו מציגים פרוטוקול מנצל שיטות transgenesis משופרת ד melanogaster כדי להוסיף היבט כמותי ללימוד צרס. מניסיוננו כאשר לכימות פעילות הרגולציה של cre, וריאציה בין דגימות לשכפל היא של 10% או פחות של הערך הממוצע מותאם פיקסל משכפל כאשר הם (1) של השלב ההתפתחותי אותו (2) הוא כתב transgeneב באתר גנומי זהה הנחיתה. זו כמות וריאציה עולה בקנה אחד עם זה נקבע על צרס המוצג באיור 3, ומקומות מגבלה על השימוש בשיטה זו כמותית למצבים בהם גרסאות שונות גנטית של Cre שונים בפעילות הרגולציה לפי ערך גדול יותר מאשר 10%. חשוב לציין כי, מגבלה זו מהווה שיפור משמעותי לעומת התיאורים האיכותי של &quot;מופחת&quot; או &quot;עלייה&quot; כי מי צרס לומד בעבר להשתמש בתיאור פעילות משתנים. כאשר גרסאות של Cre ידועים או נמצא כמותית שונים בפעילות הרגולציה שלהם, פרוטוקול זה הופך אפשרי בקביעת ההבדלים מוטציוני אחראים או לתרום ההבדל פעילות 12,13. היכולת לזהות אלו תפקודית הרלוונטיים מוטציות היא צעד ראשון הכרחי כדי לקבוע את המנגנונים המולקולריים, כגון הרווח או ההפסד של transcriגורם ption אתרי הקישור, גורמת פעילות Cre להיות שונה. במבט קדימה, השימוש בפרוטוקול זה עבור אחרים צרס תסיסנית ויישום של שיטות דומות פרוטוקולים עבור אורגניזמים מודל אחר צריך לאפשר הבנה טובה יותר של Cre הגיון לצאת. זה כולל יכולת להבחין מבחינה תפקודית הרלוונטיים מוטציות Cre מעל הביצה של תפקודית נייטרלי מוטציות.

quantitative comparison of cis-regulatory element (cre) activities in transgenic drosophila melanogaster

דפוסי ביטוי גנים שצוינו על ידי cis-הרגולציה (Cre) רצפים אלמנט, אשר נקראים גם משפרי או cis-הרגולציה מודולים. Cre טיפוסי בעל הסדר של אתרי קישור מספר גורם שעתוק חלבונים המקנים היגיון הרגולציה לציין מתי, היכן, ובאיזה רמה את הגן מוסדר (ים) באה לידי ביטוי. סט מלא של צרס בתוך הגנום מקודד חיה בתוכנית של האורגניזם 1 עבור פיתוח, אמפירי, כמו גם מחקרים תיאורטיים מצביעים על כך מוטציות צרס שיחק תפקיד מרכזי באבולוציה מורפולוגית 2-4. יתר על כן, הגנום האנושי מחקרים רחב העמותה עולה כי שונות גנטית ב צרס לתרום באופן משמעותי כדי וריאציה פנוטיפי 5,6. לפיכך, הבנה הגיון הרגולציה וכיצד מוטציות להשפיע על לוגיקה כזו היא המטרה המרכזית של הגנטיקה. Transgenes כתב לספק שיטה רבת עוצמה כדי לחקור את in vivo function של צרס. הנה רצף ידועים או חשודים Cre היא מצמידים את האמרגן Heterologous רצפים הגן המקודד כתב קידוד המוצר חלבון נצפות בקלות. כאשר כתב transgene מוכנס לתוך הפונדקאי, הפעילות של Cre הופך לגלוי בצורה של החלבון המקודד הכתב. P-אלמנט transgenesis בתיווך של זבוב הפירות מינים תסיסנית (ד &#39;) melanogaster 7 שימש במשך עשרות שנים כדי להציג transgenes כתב לתוך אורגניזם מודל זה, למרות המיקום הגנומי של transgenes היא אקראית. לפיכך, פעילות הגן כתב מושפעת במידה רבה על ידי הכרומטין המקומית סביבת הגן, להגביל השוואות Cre כדי להיות איכותי. בשנים האחרונות, המערכת phiC31 אינטגרציה מבוסס הותאם לשימוש ד melanogaster להכניס לתוך transgenes ספציפי הנחיתה 8-10 הגנום אתרים. יכולת זו הפכה את מדידה כמותית של גנים, רלוונטי כאן, cre 11-13 פעילות המוקדasible. הייצור של זבובי פירות מהונדס יכול להיות במיקור חוץ, כולל אינטגרציה phiC31 מבוססות, ומבטל את הצורך לרכוש ציוד יקר ו / או מיומנות מיוחדת פרוטוקולי transgene ההזרקה. כאן, אנו מציגים פרוטוקול כללית כמותית ולהעריך פעילות של cre, ולהראות כיצד גישה זו ניתן להשתמש כדי למדוד את ההשפעות של מוטציה הציג על פעילות של Cre ולהשוות את פעילותם של צרס orthologous. למרות הדוגמאות הן עבור פעיל Cre במהלך המטמורפוזה זבוב הפירות, הגישה יכול להיות מיושם על שלבי התפתחות אחרים, לטוס מינים פירות, או אורגניזמים מודל. בסופו של דבר, השימוש הנרחב יותר של גישה זו צרס המחקר צריך לקדם הבנה של הלוגיקה הרגולציה ואיך ההיגיון יכול להשתנות ולהתפתח.

Watch this Scientific Journal Video about Quantitative Comparison of cis-Regulatory Element CRE Activities in Transgenic Drosophila melanogaster at JoVE.com

Quantitative Comparison of cis-Regulatory Element CRE Activities in Transgenic Drosophila melanogaster

וריאציה פנוטיפי עבור תכונות יכול לנבוע מוטציות cis-הרגולציה (Cre) רצפים אלמנט השליטה דפוסי ביטוי גנים. שיטות נגזר לשימוש תסיסנית melanogaster יכול כמותית להשוות את רמות דפוסי במרחב ובזמן של ביטוי גנים בתיווך או שונה באופן טבעי וריאנטים cre.

השוואה כמותית של Cis-רגולטוריות (Cre) אלמנט פעילות טראנסגנטי תסיסנית melanogaster</em

Gene expression patterns are specified by cis-regulatory element (CRE) sequences, which are also called enhancers or cis-regulatory modules. A typical CRE ...

quantitative-comparison-cis-regulatory-element-cre-activities

Nanyang Technological University

Research

JoVE Journal

Biology

Quantitative Comparison of cis-Regulatory Element (CRE) Activities in Transgenic Drosophila melanogaster

11.7K Views.  University of Dayton. וריאציה פנוטיפי עבור תכונות יכול לנבוע מוטציות cis-הרגולציה (Cre) רצפים אלמנט השליטה דפוסי ביטוי גנים. שיטות נגזר לשימוש תסיסנית melanogaster יכול כמותית להשוות את רמות דפוסי במרחב ובזמן של ביטוי גנים בתיווך או שונה באופן טבעי וריאנטים cre.

Video: Quantitative Comparison of cis-Regulatory Element CRE Activities in Transgenic Drosophila melanogaster

Dissection of Larval CNS in Drosophila Melanogaster

The central nervous system (CNS) of Drosophila larvae is complex and poorly understood.  One way to investigate the CNS is to use immunohistochemistry to examine the expression of various novel and marker proteins.  Staining of whole larvae is impractical because the tough cuticle prevents antibodies from penetrating inside the body cavity.  In order to stain these tissues it is necessary to dissect the animal prior to fixing and staining.  In this article we demonstrate how to dissect Drosophila larvae without damaging the CNS.  Begin by tearing the larva in half with a pair of fine forceps, and then turn the cuticle "inside-out" to expose the CNS.  If the dissection is performed carefully the CNS will remain attached to the cuticle.  We usually keep the CNS attached to the cuticle throughout the fixation and staining steps, and only completely remove the CNS from the cuticle just prior to mounting the samples on glass slides.  We also show some representative images of a larval CNS stained with Eve, a transcription factor expressed in a subset of neurons in the CNS.  The article concludes with a discussion of some of the practical uses of this technique and the potential difficulties that may arise.

In this article we demonstrate how to dissect the central nervous system from third instar Drosophila larvae.

Dissection של מערכת העצבים המרכזית הזחל ב תסיסנית melanogaster

The central nervous system (CNS) of Drosophila larvae is complex and poorly understood.  One way to investigate the CNS is to use immunohistochemistry to ...

High-Resolution Video Tracking of Locomotion in Adult Drosophila Melanogaster

Flies provide an important model for studying complex behavior due to the plethora of genetic tools available to researchers in this field. Studying locomotor behavior in Drosophila melanogaster relies on the ability to be able to quantify changes in motion during or in response to a given task. For this reason, a high-resolution video tracking system, such as the one we describe in this paper, is a valuable tool for measuring locomotion in real-time. Our protocol involves the use of an initial air pulse to break the flies momentum, followed by a thirty second filming period in a square chamber. A tracking program is then used to calculate the instantaneous speed of each fly within the chamber in 10 msec increments. Analysis software then compiles this data, and outputs a variety of parameters such as average speed, max speed, time spent in motion, acceleration, etc. This protocol will discuss proper feeding and management of flies for behavioral tasks, handling flies without anesthetization or immobilization, setting up a controlled environment, and running the assay from start to finish.

The study of complex locomotor behavior in Drosophila melanogaster is dependent upon the ability to quantify changes in a given fly's movement. This article demonstrates how to do this using a high-resolution tracking system.

וידאו ברזולוציה גבוהה של מעקב אחר תנועה של מבוגרים תסיסנית melanogaster

Flies provide an important model for studying complex behavior due to the plethora of genetic tools available to researchers in this field.  Studying ...

Monitoring Heart Function in Larval Drosophila melanogaster for Physiological Studies

We present various methods to record cardiac function in the larval Drosophila. The approaches allow heart rate to be measured in unrestrained and restrained whole larvae. For direct control of the environment around the heart another approach utilizes the dissected larvae and removal of the internal organs in order to bathe the heart in desired compounds. The exposed heart also allows membrane potentials to be monitored which can give insight of the ionic currents generated by the myocytes and for electrical conduction along the heart tube. These approaches have various advantages and disadvantages for future experiments that are discussed. The larval heart preparation provides an additional model besides the Drosophila skeletal NMJ to investigate the role of intracellular calcium regulation on cellular function. Learning more about the underlying ionic currents that shape the action potentials in myocytes in various species, one can hope to get a handle on the known ionic dysfunctions associated to specific genes responsible for various diseases in mammals.

Monitoring Heart Function in Larval Drosophila melanogaster for Physiological Studies

We present various ways to monitor heart function in the larva of Drosophila for assessing questions dealing with the function of gap junctions, ion channel mutations, modulation of pacemaker activity and pharmacological studies.

ניטור הלב לתפקד הזחל תסיסנית melanogaster ללימודים פיזיולוגיים

We present various methods to record cardiac function in the larval Drosophila. The approaches allow heart rate to be measured in unrestrained  and  ...

Live Imaging Of Drosophila melanogaster Embryonic Hemocyte Migrations

Many studies address cell migration using in vitro methods, whereas the physiologically relevant environment is that of the organism itself. Here we present a protocol for the mounting of Drosophila melanogaster embryos and subsequent live imaging of fluorescently labeled hemocytes, the embryonic macrophages of this organism. Using the Gal4-uas system1 we drive the expression of a variety of genetically encoded, fluorescently tagged markers in hemocytes to follow their developmental dispersal throughout the embryo. Following collection of embryos at the desired stage of development, the outer chorion is removed and the embryos are then mounted in halocarbon oil between a hydrophobic, gas-permeable membrane and a glass coverslip for live imaging. In addition to gross migratory parameters such as speed and directionality, higher resolution imaging coupled with the use of fluorescent reporters of F-actin and microtubules can provide more detailed information concerning the dynamics of these cytoskeletal components.

Live Imaging Of Drosophila melanogaster Embryonic Hemocyte Migrations

Drosophila hemocytes disperse over the entirety of the developing embryo. This protocol demonstrates how to mount and image these migrations using embryos with fluorescently labelled hemocytes.

הדמיה חיה של תסיסנית melanogaster Hemocyte נדידות עובריים

Many studies address cell migration using in vitro methods, whereas the physiologically relevant environment is that of the organism itself. Here we ...

Dissection of Oenocytes from Adult Drosophila melanogaster

In Drosophila melanogaster, as in other insects, a waxy layer on the outer surface of the cuticle, composed primarily of hydrocarbon compounds, provides protection against desiccation and other environmental challenges. Several of these cuticular hydrocarbon (CHC) compounds also function as semiochemical signals, and as such mediate pheromonal communications between members of the same species, or in some instances between different species, and influence behavior. Specialized cells referred to as oenocytes are regarded as the primary site for CHC synthesis. However, relatively little is known regarding the involvement of the oenocytes in the regulation of the biosynthetic, transport, and deposition pathways contributing to CHC output. Given the significant role that CHCs play in several aspects of insect biology, including chemical communication, desiccation resistance, and immunity, it is important to gain a greater understanding of the molecular and genetic regulation of CHC production within these specialized cells. The adult oenocytes of D. melanogaster are located within the abdominal integument, and are metamerically arrayed in ribbon-like clusters radiating along the inner cuticular surface of each abdominal segment. In this video article we demonstrate a dissection technique used for the preparation of oenocytes from adult D. melanogaster. Specifically, we provide a detailed step-by-step demonstration of (1) how to fillet prepare an adult Drosophila abdomen, (2) how to identify the oenocytes and discern them from other tissues, and (3) how to remove intact oenocyte clusters from the abdominal integument. A brief experimental illustration of how this preparation can be used to examine the expression of genes involved in hydrocarbon synthesis is included. The dissected preparation demonstrated herein will allow for the detailed molecular and genetic analysis of oenocyte function in the adult fruit fly.

Dissection of Oenocytes from Adult Drosophila melanogaster

In insects, the oenocytes produce cuticular hydrocarbon compounds. These compounds protect against desiccation and facilitate chemical communication. Here we demonstrate a dissection technique used to isolate the oenocytes from adult Drosophila melanogaster, and illustrate how this preparation can be utilized to study genes involved in hydrocarbon synthesis.

Dissection של Oenocytes מן למבוגרים תסיסנית melanogaster</em

In Drosophila melanogaster, as in other insects, a waxy layer on the outer surface of the cuticle, composed primarily of hydrocarbon compounds, provides ...

Isolation of Drosophila melanogaster Testes

The testes of Drosophila melanogaster provide an important model for the study of stem cell maintenance and differentiation, meiosis, and soma-germline interactions. Testes are typically isolated from adult males 0-3 days after eclosion from the pupal case. The testes of wild-type flies are easily distinguished from other tissues because they are yellow, but the testes of white mutant flies, a common genetic background for laboratory experiments are similar in both shape and color to the fly gut. Performing dissection on a glass microscope slide with a black background makes identifying the testes considerably easier. Testes are removed from the flies using dissecting needles. Compared to protocols that use forceps for testes dissection, our method is far quicker, allowing a well-practiced individual to dissect testes from 200-300 wild-type flies per hour, yielding 400-600 testes. Testes from white flies or from mutants that reduce testes size are harder to dissect and typically yield 200-400 testes per hour.

Isolation of Drosophila melanogaster Testes

Drosophila melanogaster testes can be rapidly and efficiently isolated from adult males using dissecting needles. With practice, one can readily isolate in one or two days an amount of testes sufficient for the analysis of DNA or RNA by high throughput sequencing or more traditional molecular biology methods or of protein for antibody- or enzyme-based assays.

בידוד תסיסנית melanogaster האשכים

The testes of Drosophila melanogaster provide an important model for the study of stem cell maintenance and differentiation, meiosis, and soma-germline ...

Measurement of Lifespan in Drosophila melanogaster

Aging is a phenomenon that results in steady physiological deterioration in nearly all organisms in which it has been examined, leading to reduced physical performance and increased risk of disease. Individual aging is manifest at the population level as an increase in age-dependent mortality, which is often measured in the laboratory by observing lifespan in large cohorts of age-matched individuals. Experiments that seek to quantify the extent to which genetic or environmental manipulations impact lifespan in simple model organisms have been remarkably successful for understanding the aspects of aging that are conserved across taxa and for inspiring new strategies for extending lifespan and preventing age-associated disease in mammals.
The vinegar fly, Drosophila melanogaster, is an attractive model organism for studying the mechanisms of aging due to its relatively short lifespan, convenient husbandry, and facile genetics. However, demographic measures of aging, including age-specific survival and mortality, are extraordinarily susceptible to even minor variations in experimental design and environment, and the maintenance of strict laboratory practices for the duration of aging experiments is required. These considerations, together with the need to practice careful control of genetic background, are essential for generating robust measurements. Indeed, there are many notable controversies surrounding inference from longevity experiments in yeast, worms, flies and mice that have been traced to environmental or genetic artifacts1-4. In this protocol, we describe a set of procedures that have been optimized over many years of measuring longevity in Drosophila using laboratory vials. We also describe the use of the dLife software, which was developed by our laboratory and is available for download (<a href="http://sitemaker.umich.edu/pletcherlab/software">http://sitemaker.umich.edu/pletcherlab/software</a>). dLife accelerates throughput and promotes good practices by incorporating optimal experimental design, simplifying fly handling and data collection, and standardizing data analysis. We will also discuss the many potential pitfalls in the design, collection, and interpretation of lifespan data, and we provide steps to avoid these dangers.

Measurement of Lifespan in Drosophila melanogaster

Drosophila melanogaster is a powerful model organism for exploring the molecular basis of longevity regulation. This protocol will discuss the steps involved in generating a reproducible, population-based measurement of longevity as well as potential pitfalls and how to avoid them.

מדידה של תוחלת חיים ב<em&gt; דרוזופילה melanogaster</em

Aging is a phenomenon that results in steady physiological deterioration in nearly all organisms in which it has been examined, leading to reduced ...

Imaging Through the Pupal Case of Drosophila melanogaster

The longstanding use of Drosophila as a model for cell and developmental biology has yielded an array of tools. Together, these techniques have enabled analysis of cell and developmental biology from a variety of methodological angles. Live imaging is an emerging method for observing dynamic cell processes, such as cell division or cell motility. Having isolated mutations in uncharacterized putative cell cycle proteins it became essential to observe mitosis in situ using live imaging. Most live imaging studies in Drosophila have focused on the embryonic stages that are accessible to manipulation and observation because of their small size and optical clarity. However, in these stages the cell cycle is unusual in that it lacks one or both of the gap phases. By contrast, cells of the pupal wing of Drosophila have a typical cell cycle and undergo a period of rapid mitosis spanning about 20 hr of pupal development. It is easy to identify and isolate pupae of the appropriate stage to catch mitosis in situ. Mounting intact pupae provided the best combination of tractability and durability during imaging, allowing experiments to run for several hours with minimal impact on cell and animal viability. The method allows observation of features as small as, or smaller than, fly chromosomes. Adjustment of microscope settings and the details of mounting, allowed extension of the preparation to visualize membrane dynamics of adjacent cells and fluorescently labeled proteins such as tubulin. This method works for all tested fluorescent proteins and can capture submicron scale features over a variety of time scales. While limited to the outer 20 &#181;m of the pupa with a conventional confocal microscope, this approach to observing protein and cellular dynamics in pupal tissues in vivo may be generally useful in the study of cell and developmental biology in these tissues.

Imaging Through the Pupal Case of Drosophila melanogaster

This paper demonstrates the use of a fast scanning confocal microscope to image cell behavior directly through the puparium. By leaving the pupal case intact, this method allows observation and measurement of dynamic cell processes at a stage of Drosophila development that is difficult to study directly.

הדמיה באמצעות המקרה גלמי של<em&gt; Melanogaster דרוזופילה</em

The longstanding use of Drosophila as a model for cell and developmental biology has yielded an array of tools. Together, these techniques have enabled ...

Enhanced Northern Blot Detection of Small RNA Species in Drosophila Melanogaster

The last decades have witnessed the explosion of scientific interest around gene expression control mechanisms at the RNA level. This branch of molecular biology has been greatly fueled by the discovery of noncoding RNAs as major players in post-transcriptional regulation. Such a revolutionary perspective has been accompanied and triggered by the development of powerful technologies for profiling short RNAs expression, both at the high-throughput level (genome-wide identification) or as single-candidate analysis (steady state accumulation of specific species). Although several state-of-art strategies are currently available for dosing or visualizing such fleeing molecules, Northern Blot assay remains the eligible approach in molecular biology for immediate and accurate evaluation of RNA expression. It represents a first step toward the application of more sophisticated, costly technologies and, in many cases, remains a preferential method to easily gain insights into RNA biology. Here we overview an efficient protocol (Enhanced Northern Blot) for detecting weakly expressed microRNAs (or other small regulatory RNA species) from Drosophila melanogaster whole embryos, manually dissected larval/adult tissues or in vitro cultured cells. A very limited amount of RNA is required and the use of material from flow cytometry-isolated cells can be also envisaged.

Enhanced Northern Blot Detection of Small RNA Species in Drosophila Melanogaster

The aim of this publication is to visualize and discuss the operative steps of an Enhanced Northern Blot protocol on RNA extracted from Drosophila melanogaster embryos, cells, and tissues. This protocol is particularly useful for the efficient detection of small RNA species.

Enhanced צפון כתם איתור של RNA קטן מינים ב<em&gt; תסיסנית</em

The last decades have witnessed the explosion of scientific interest around gene expression control mechanisms at the RNA level. This branch of molecular ...

Maintenance of a Drosophila melanogaster Population Cage

Large quantities of DNA, RNA, proteins and other cellular components are often required for biochemistry and molecular biology experiments. The short life cycle of Drosophila enables collection of large quantities of material from embryos, larvae, pupae and adult flies, in a synchronized way, at a low economic cost. A major strategy for propagating large numbers of flies is the use of a fly population cage. This useful and common tool in the Drososphila community is an efficient way to regularly produce milligrams to tens of grams of embryos, depending on uniformity of developmental stage desired. While a population cage can be time consuming to set up, maintaining a cage over months takes much less time and enables rapid collection of biological material in a short period. This paper describes a detailed and flexible protocol for the maintenance of a Drosophila melanogaster population cage, starting with 1.5 g of harvested material from the previous cycle.

Maintenance of a Drosophila melanogaster Population Cage

This manuscript reports a detailed protocol for culturing, on a regular basis, a population of Drosophila melanogaster using a fly population cage.

תחזוקה של<em&gt; תסיסנית</em&gt; אוכלוסיית קייג

Large quantities of DNA, RNA, proteins and other cellular components are often required for biochemistry and molecular biology experiments. The short life ...