The authors acknowledge Meike Schaffrinski for excellent technical assistance. We would like to thank the following people for their help in the collection of peripheral blood samples (all from University Medical Center G&#246;ttingen): Henrietta Vida (Dept. of Transfusion Medicine), Kia Homayounfar, Lena-Christin Conradi (Dept. of General, Visceral and Pediatric Surgery), Leila Siam, Bawarjan Schatlo (Dept. of Neurosurgery), Hendrik A. Wolff, Martin Canis (Dept. of Otorhinolaryngology, Head and Neck Surgery) as well as all employees of the interdisciplinary short-term oncology. We acknowledge Dirk Wenzel (Max Planck Institute for Biophysical Chemistry, G&#246;ttingen) for his help with the electron microscopy of MVs. 
The study was funded by the German Ministry of Education and Research (BMBF) project MetastaSys (grant no. 0316173) as well as the German Cancer Aid (grant no. 109615).

All experiments including human subjects have been approved by the local ethics committee (approval no. 3/2/14). For the choice of patients it should be noted that several factors such as age, sex, current therapy regimens and many more may influence MV composition in blood and therefore should be taken into consideration prior to sample collection 22,23.
1. Preparation of Plasma Samples
<ol>
	<li>Draw 1 - 2 tubes of blood per donor through a 21-gauge butterfly needle into a vacutainer blood collection tube containing EDTA (1.6 mg/mL blood). Make sure to invert the tube(s) several times to guarantee efficient blood anticoagulation. 
	NOTE: The recommended volume of blood for subsequent flow cytometry and Western Blot analysis is 5 - 15 mL. In order to prevent MV degradation and loss, blood samples should be handled &#60; 30 min after blood withdrawal.</li>
	<li>Prepare plasma samples by centrifuging the samples for 15 min at 1,200 x g at room temperature (RT).</li>
	<li>Apply a valve filter in order to help the separation of plasma (= upper layer) from remaining blood cells (= lower layer).</li>
	<li>Transfer the plasma into a 15 mL tube.</li>
	<li>Centrifuge for 15 min at 1,500 x g, RT to pellet larger cell debris and remove remaining platelets.</li>
	<li>Transfer the supernatant into a 15 mL tube and directly proceed with MV isolation or store samples for up to 6 months at -20 &#176;C. 
	NOTE: The presented protocol can also be used to isolate MVs (and Exos) from cell culture supernatants. In order to do so, cultivate cells at 60 - 80% confluency for 24 - 48 h in culture medium supplemented with vesicle-depleted FCS, and then collect the supernatant. Centrifuge for 5 min at 750 x g, 4 &#176;C to deplete residual floating cells, fill the supernatant into a new 15 mL tube and centrifuge again for 5 min at 1,500 x g, 4 &#176;C to pellet larger cell debris. This supernatant can then be used for the isolation of MVs as described in Step 2.1 - 2.16.</li>
</ol>
2. Isolation of MVs
<ol>
	<li>Transfer the plasma sample in a suitable centrifugation tube. If necessary, fill up tube with PBS in order to dilute the sample and prevent collapse of thin-walled tubes during the centrifugation procedure.</li>
	<li>Centrifuge for 35 min at 14,000 x g, 4 &#176;C.</li>
	<li>Decant supernatant, keep tubes turned upside-down and put on a paper towel. Wait 3 - 5 min until all remaining supernatant has been soaked into the towel and thereby removed from the sample.</li>
	<li>Resuspend the MV pellet in 1,000 &#181;L PBS, transfer to a 1.5 mL tube and centrifuge for 35 min at 14,000 x g, 4 &#176;C in a tabletop centrifuge.</li>
	<li>Aspirate supernatant.</li>
	<li>Resuspend the MV pellet in 50 - 500 &#181;L PBS, depending on the size of the pellet. Alternatively, lyse MVs directly, e.g., in RIPA buffer (150 mM NaCl/ 0.1% SDS/ 0.5% Na-deoxycholate/ 1% Triton X-100/ 50 mM Tris, pH 7.2) for subsequent Western Blot analysis. Store MVs at -20 &#176;C. They will remain stable for several months, but avoid repeated freeze-thaw-cycles.</li>
	<li>Optional: Determine the MV protein concentration with a protein assay (e.g., Bradford or Lowry method) in order to assess MV yields or dose MVs for subsequent experiments.</li>
	<li>If additional Exos are to be isolated from the plasma samples, decant the supernatant from step 2.3 into an ultracentrifugation tube and centrifuge for 2 h at 110,000 x g, 4 &#176;C. Decant the supernatant as described in step 2.3, resuspend Exo pellet in 1,000 &#181;L PBS and transfer into small (1.5 mL) ultracentrifugation tubes.
	<ol>
		<li>Ultracentrifuge for 2 h at 110,000 x g, 4 &#176;C, aspirate supernatant and resuspend Exo pellet in 50 - 75 &#181;L PBS or RIPA buffer.</li>
	</ol>
	</li>
</ol>
3. Characterization of MVs by Flow Cytometry
<ol>
	<li>Transfer 15 &#181;L PBS+1% vesicle-depleted fetal calf serum (FCS) in a flow cytometry tube. 
	NOTE: Vesicle-depleted FCS is prepared by centrifuging heat-inactivated (30 min at 56 &#176;C) FCS for 18 h at 110,000 x g and filtrating the supernatant through a 0.2 &#181;m filter as described previously 24.</li>
	<li>Add 5 &#181;g (in case of low yields 3 &#181;g are also applicable) of MVs in PBS.</li>
	<li>Incubate samples for 30 min at RT in order to block unspecific binding sites at the MV surface and thereby reduce background staining.</li>
	<li>Add a fluorescently labeled antibody against the protein-of-interest. Titrate the amount of antibody used for the staining prior to use in order to determine the optimal concentration and guarantee a low signal-to-noise ration. Make sure to also include one tube with unstained MVs as negative control and one tube of MVs stained with the matching isotype control antibody at the same concentration (e.g., if 1 &#181;g of antibody is used, also use 1 &#181;g of the isotype control antibody) to quantify background staining. 
	NOTE: It is also possible to perform multicolor flow cytometry by adding multiple antibodies coupled to different fluorochromes.</li>
	<li>Incubate for 20 min at RT in the dark.</li>
	<li>Add 250 &#181;L PBS and proceed with measurement of the sample using a flow cytometer.
	<ol>
		<li>In case that samples cannot be measured immediately, add 150 &#181;L PBS and 50 &#181;L 4% paraformaldehyde (PFA) to fix samples and store at 4 &#176;C. CAUTION: PFA is toxic. Use gloves and suitable personal protective equipment.</li>
	</ol>
	</li>
	<li>Reduce the threshold of the flow cytometer to the lowest value possible and search for the MV population using a forward scatter (FSC) versus side scatter (SSC) plot in logarithmic scale. Gate on the MV population and evaluate the fluorescent signal in a corresponding histogram.</li>
</ol>
4. Characterization of MVs by Western Blotting
<ol>
	<li>Resuspend the MV pellet directly in a suitable lysis buffer (e.g., RIPA buffer).
	<ol>
		<li>In case the MV pellet has already been resuspended in PBS, dilute it at least 1:1 in a suitable lysis buffer (e.g., RIPA buffer).</li>
	</ol>
	</li>
	<li>Determine the protein concentration of the MV sample, e.g., by Lowry assay.</li>
	<li>Prepare 10 - 20 &#181;g of MVs in 22.5 &#181;L RIPA buffer. Then add 7.5 &#181;L 4x Laemmli loading buffer and heat for 5 min at 95 &#176;C.</li>
	<li>Load samples on a polyacrylamide gel and perform electrophoresis and immunoblotting according to standard protocols.</li>
	<li>After transferring the proteins onto the membrane, perform a Ponceau staining as a loading control according to standard protocols.</li>
	<li>Destain membrane in TBST for 5 min at RT.</li>
	<li>Block membrane for 30 min up to 1 h at RT in 5% BSA in TBST.</li>
	<li>Incubate membrane with the primary antibody at 4 &#176;C overnight or for 2 h at RT.</li>
	<li>Wash the membrane with TBST 3 x 5 min.</li>
	<li>Incubate membrane with the HRP-coupled secondary antibody at a dilution of 1:10,000 in 5% BSA. Note: In case of high background signals, use milk powder instead of BSA.</li>
	<li>Wash the membrane with TBST 3x 5 min.</li>
	<li>Develop membrane with an ECL detection reagent and detect signals on chemiluminescence films or a chemiluminescence imaging system. 
	NOTE: In order to discriminate MVs from Exos, proteins like Tubulin, actinin-4 or mitofilin can be used which should mainly be present on MVs 16,25. Pay attention that most tetraspanin antibodies (e.g., CD9, CD81), used as markers for Exos, do not work under reducing conditions and should therefore be prepared in non-reducing loading buffer followed by heating for 10 min at 70 &#176;C.</li>
</ol>

<ol>
	<li>Raposo, G., Stoorvogel, W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Extracellular+vesicles:+Exosomes,+microvesicles,+and+friends.">Extracellular vesicles: Exosomes, microvesicles, and friends.</a> J Cell Biol. 200 (4), 373-383 (2013).</li><li>Y&#225;&#241;ez-M&#243;, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Biological+properties+of+extracellular+vesicles+and+their+physiological+functions.">Biological properties of extracellular vesicles and their physiological functions.</a> J Extracell Vesicles. 4, (2015).</li><li>Guescini, M., Genedani, S., Stocchi, V., Agnati, L. F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Astrocytes+and+Glioblastoma+cells+release+exosomes+carrying+mtDNA.">Astrocytes and Glioblastoma cells release exosomes carrying mtDNA.</a> J Neural Transm (Vienna). 117 (1), 1-4 (2010).</li><li>Balaj, L., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Tumour+microvesicles+contain+retrotransposon+elements+and+amplified+oncogene+sequences.">Tumour microvesicles contain retrotransposon elements and amplified oncogene sequences.</a> Nat Commun. 2, 180 (2011).</li><li>Lee, T. H., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Oncogenic+ras-driven+cancer+cell+vesiculation+leads+to+emission+of+double-stranded+DNA+capable+of+interacting+with+target+cells.">Oncogenic ras-driven cancer cell vesiculation leads to emission of double-stranded DNA capable of interacting with target cells.</a> Biochem Biophys Res Commun. 451 (2), 295-301 (2014).</li><li>Chi, K. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+tumour+trail+left+in+blood.">The tumour trail left in blood.</a> Nature. 532 (7598), 269-271 (2016).</li><li>Pisitkun, T., Shen, R. -. F., Knepper, M. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Identification+and+proteomic+profiling+of+exosomes+in+human+urine.">Identification and proteomic profiling of exosomes in human urine.</a> Proc Natl Acad Sci USA. 101 (36), 13368-13373 (2004).</li><li>Harrington, M. G., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+morphology+and+biochemistry+of+nanostructures+provide+evidence+for+synthesis+and+signaling+functions+in+human+cerebrospinal+fluid.">The morphology and biochemistry of nanostructures provide evidence for synthesis and signaling functions in human cerebrospinal fluid.</a> Cerebrospinal Fluid Res. 6, 10 (2009).</li><li>Admyre, C., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Exosomes+with+Immune+Modulatory+Features+Are+Present+in+Human+Breast+Milk.">Exosomes with Immune Modulatory Features Are Present in Human Breast Milk.</a> J Immunol. 179 (3), 1969-1978 (2007).</li><li>Caby, M. -. P., Lankar, D., Vincendeau-Scherrer, C., Raposo, G., Bonnerot, C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Exosomal-like+vesicles+are+present+in+human+blood+plasma.">Exosomal-like vesicles are present in human blood plasma.</a> Int Immunol. 17 (7), 879-887 (2005).</li><li>Nieuwland, R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cellular+origin+and+procoagulant+properties+of+microparticles+in+meningococcal+sepsis.">Cellular origin and procoagulant properties of microparticles in meningococcal sepsis.</a> Blood. 95 (3), 930-935 (2000).</li><li>Mfonkeu, J. B. P., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Elevated+Cell-Specific+Microparticles+Are+a+Biological+Marker+for+Cerebral+Dysfunctions+in+Human+Severe+Malaria.">Elevated Cell-Specific Microparticles Are a Biological Marker for Cerebral Dysfunctions in Human Severe Malaria.</a> PLoS One. 5 (10), e13415 (2010).</li><li>Parker, B., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Suppression+of+inflammation+reduces+endothelial+microparticles+in+active+systemic+lupus+erythematosus.">Suppression of inflammation reduces endothelial microparticles in active systemic lupus erythematosus.</a> Ann Rheum Dis. 73 (6), 1144-1150 (2014).</li><li>Nozaki, T., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Prognostic+value+of+endothelial+microparticles+in+patients+with+heart+failure.">Prognostic value of endothelial microparticles in patients with heart failure.</a> Eur J Heart Fail. 12 (11), 1223-1228 (2010).</li><li>Galindo-Hernandez, O., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Elevated+concentration+of+microvesicles+isolated+from+peripheral+blood+in+breast+cancer+patients.">Elevated concentration of microvesicles isolated from peripheral blood in breast cancer patients.</a> Arch Med Res. 44 (3), 208-214 (2013).</li><li>Menck, K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Tumor-derived+microvesicles+mediate+human+breast+cancer+invasion+through+differentially+glycosylated+EMMPRIN.">Tumor-derived microvesicles mediate human breast cancer invasion through differentially glycosylated EMMPRIN.</a> J Mol Cell Biol. 7 (2), 143-153 (2015).</li><li>Moon, P. -. G., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Identification+of+Developmental+Endothelial+Locus-1+on+Circulating+Extracellular+Vesicles+as+a+Novel+Biomarker+for+Early+Breast+Cancer+Detection.">Identification of Developmental Endothelial Locus-1 on Circulating Extracellular Vesicles as a Novel Biomarker for Early Breast Cancer Detection.</a> Clin Cancer Res. 22 (7), 1757-1766 (2016).</li><li>Melo, S. A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Glypican-1+identifies+cancer+exosomes+and+detects+early+pancreatic+cancer.">Glypican-1 identifies cancer exosomes and detects early pancreatic cancer.</a> Nature. 523 (7559), 177-182 (2015).</li><li>Kahlert, C., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Identification+of+Double-stranded+Genomic+DNA+Spanning+All+Chromosomes+with+Mutated+KRAS+and+p53+DNA+in+the+Serum+Exosomes+of+Patients+with+Pancreatic+Cancer.">Identification of Double-stranded Genomic DNA Spanning All Chromosomes with Mutated KRAS and p53 DNA in the Serum Exosomes of Patients with Pancreatic Cancer.</a> J Biol Chem. 289 (7), 3869-3875 (2014).</li><li>Shao, H., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Protein+typing+of+circulating+microvesicles+allows+real-time+monitoring+of+glioblastoma+therapy.">Protein typing of circulating microvesicles allows real-time monitoring of glioblastoma therapy.</a> Nat Med. 18 (12), 1835-1840 (2012).</li><li>L&#228;sser, C., Eldh, M., L&#246;tvall, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Isolation+and+Characterization+of+RNA-Containing+Exosomes.">Isolation and Characterization of RNA-Containing Exosomes.</a> J Vis Exp. (59), (2012).</li><li>Witwer, K. W., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Standardization+of+sample+collection,+isolation+and+analysis+methods+in+extracellular+vesicle+research.">Standardization of sample collection, isolation and analysis methods in extracellular vesicle research.</a> J Extracell Vesicles. 2, (2013).</li><li>Gustafson, C. M., Shepherd, A. J., Miller, V. M., Jayachandran, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Age-+and+sex-specific+differences+in+blood-borne+microvesicles+from+apparently+healthy+humans.">Age- and sex-specific differences in blood-borne microvesicles from apparently healthy humans.</a> Biol Sex Differ. 6, (2015).</li><li>Shelke, G. V., L&#228;sser, C., Gho, Y. S., L&#246;tvall, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Importance+of+exosome+depletion+protocols+to+eliminate+functional+and+RNA-containing+extracellular+vesicles+from+fetal+bovine+serum.">Importance of exosome depletion protocols to eliminate functional and RNA-containing extracellular vesicles from fetal bovine serum.</a> J Extracell Vesicles. 3, (2014).</li><li>Kowal, J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Proteomic+comparison+defines+novel+markers+to+characterize+heterogeneous+populations+of+extracellular+vesicle+subtypes.">Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes.</a> Proc Natl Acad Sci USA. 113 (8), E968-E977 (2016).</li><li>Dignat-George, F., Boulanger, C. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+Many+Faces+of+Endothelial+Microparticles.">The Many Faces of Endothelial Microparticles.</a> Arterioscler Thromb Vasc Biol. 31 (1), 27-33 (2011).</li><li>Esser, M. T., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Differential+Incorporation+of+CD45,+CD80+(B7-1),+CD86+(B7-2),+and+Major+Histocompatibility+Complex+Class+I+and+II+Molecules+into+Human+Immunodeficiency+Virus+Type+1+Virions+and+Microvesicles:+Implications+for+Viral+Pathogenesis+and+Immune+Regulation.">Differential Incorporation of CD45, CD80 (B7-1), CD86 (B7-2), and Major Histocompatibility Complex Class I and II Molecules into Human Immunodeficiency Virus Type 1 Virions and Microvesicles: Implications for Viral Pathogenesis and Immune Regulation.</a> J Virol. 75 (13), 6173-6182 (2001).</li><li>Canellini, G., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Red+blood+cell+microparticles+and+blood+group+antigens:+an+analysis+by+flow+cytometry.">Red blood cell microparticles and blood group antigens: an analysis by flow cytometry.</a> Blood Transfus. 10 (2), s39-s45 (2012).</li><li>Scholz, T., Temmler, U., Krause, S., Heptinstall, S., L&#246;sche, W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Transfer+of+tissue+factor+from+platelets+to+monocytes:+role+of+platelet-derived+microvesicles+and+CD62P.">Transfer of tissue factor from platelets to monocytes: role of platelet-derived microvesicles and CD62P.</a> Thromb Haemost. 88 (6), 1033-1038 (2002).</li><li>Berckmans, R. J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cell-derived+microparticles+circulate+in+healthy+humans+and+support+low+grade+thrombin+generation.">Cell-derived microparticles circulate in healthy humans and support low grade thrombin generation.</a> Thromb Haemost. 85 (4), 639-646 (2001).</li><li>Rupp, A. -. K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Loss+of+EpCAM+expression+in+breast+cancer+derived+serum+exosomes:+role+of+proteolytic+cleavage.">Loss of EpCAM expression in breast cancer derived serum exosomes: role of proteolytic cleavage.</a> Gynecol Oncol. 122 (2), 437-446 (2011).</li><li>Taylor, D. D., Gercel-Taylor, C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=MicroRNA+signatures+of+tumor-derived+exosomes+as+diagnostic+biomarkers+of+ovarian+cancer.">MicroRNA signatures of tumor-derived exosomes as diagnostic biomarkers of ovarian cancer.</a> Gynecol Oncol. 110 (1), 13-21 (2008).</li></ol>

The authors have nothing to disclose.

Recent studies on EVs in blood have demonstrated that EV composition and counts change during the cause of several diseases. Therefore, the analysis and further characterization of these EVs are of high interest to further assess their potential use as disease biomarkers for diagnosis and prognosis or to evaluate therapy responses. The protocol we present here allows the isolation of vesicles with a diameter of up to 600 nm which do not contain any cell organelles. These observations are in line with the current definition of MVs and exclude the presence of apoptotic bodies 2. Using Western Blotting, we were able to demonstrate that the isolated MVs show a high expression of Tubulin, while the tetraspanins CD9 and CD81 that are often used as Exo markers were only slightly expressed. This confirms that MVs differ from Exos and fits to recent in-depth characterization and comparison of both EV populations by proteomics 25.
During acquisition of blood samples, it is critical to keep the time between venipuncture and plasma preparation as short as possible in order to prevent MV degradation. Moreover, prolonged storage of blood samples could lead to the activation of blood cells causing enhanced MV shedding and ultimately apoptosis which results in the release of apoptotic bodies. Another important consideration for MV isolation is to prevent contaminations of MV preparations with plasma proteins or smaller Exos. Therefore, it is critical to remove as much of the supernatant as possible after spinning down the MVs at 14,000 x g. Since the pellet is normally visible and tightly attached to the wall of the tube, the supernatant can be easily removed with a pipette tip. In contrast to Exos which tend to form aggregates during preparation by high speed ultracentrifugation and are often hard to resuspend, this problem does not occur with MVs.
Our study shows that it is possible to characterize MV subpopulations present in blood by flow cytometry. Although the detection limit of most flow cytometers is around 200 - 300 nm, MVs were reproducibly measured in donor as well as cell culture samples with the same parameters of analysis and gates that clearly allowed their distinction from background signals. It is important to verify prior to the measurements that the PBS used for the analyses does not contain any contaminating particles that could cause a high background during flow cytometry (Figure 3). Although some smaller MVs might not be captured in a flow cytometric approach, we detected MVs from all major blood cell populations (e.g., platelets, red blood cells, leukocytes, endothelial cells). In our analyses we used standard markers for the different blood cells that have been previously found on MVs 26-29. It should be noted that in order to obtain the best possible results by flow cytometry, the amount and concentration of all antibodies should be titrated on a MV sample expressing the antigen of interest. If specific MV subpopulations in blood shall be identified with higher specificity, it is possible to perform double staining against two different antigens present on the respective MVs and only consider all double positive MVs for subsequent analyses 23. Currently, there are efforts to define a standard range of MV subpopulations in blood of healthy individuals 23,30. These studies have already shown that platelet-derived MVs constitute the largest population of MVs in blood which is in correspondence with our observations.
One advantage of flow cytometry to characterize MV samples is that this method is already well established for diagnostic purposes in most clinical centers which would allow the possible use of MVs as biomarkers in everyday clinical diagnostics. Previous studies on EVs in blood which have mostly focused on smaller Exos, rely on either specific sorting procedures to selectively analyze the desired Exo target population 31,32 or require a time-consuming (2 days) isolation process with coupling of Exos to Latex beads prior to analysis 18. Our own unpublished observations suggest that the flow cytometric analysis of MVs from whole blood preparations even allows the detection of MVs such as tumor-derived MVs without any such selection processes.
Taken together, the protocol presented here allows the fast isolation of MVs from peripheral blood samples with standard lab equipment and their subsequent characterization using flow cytometry and Western Blotting. The whole process can be performed in around 2 h which will facilitate future studies on MV profiles in patients&#39; blood that are required to assess the potential of MVs as disease biomarkers.

In the last years many in vitro studies have demonstrated that extracellular vesicles (EVs) play an important role in intercellular communication. Living cells constantly shed vesicles which differ in size, content and biogenesis. The best studied EVs are exosomes which originate from the endosomal system where they are stored as intraluminal vesicles in multivesicular bodies. Once the latter fuse with the plasma membrane, the contained vesicles are released as exosomes (Exos, diameter 30 - 100 nm1). A second population of EV which has gained increasing attention in the last years are large microvesicles (MVs, diameter 100 - 1,000 nm) which bud off directly from the plasma membrane 2.
Both types of vesicles are surrounded by a lipid bilayer and contain nucleic acids, e.g., DNA, mRNA or miRNA 3-5, and a plethora of proteins which they can transfer to neighboring cells . While in general the protein composition of the vesicles reflects the state of the cell of origin, some proteins seem to be selectively targeted and enriched on EVs 1. A major research interest is to characterize EVs from abnormal and diseased cells in order to define specific EV signatures which might allow the use of EVs as novel biomarkers. Especially in cancer, in which often the tumor itself is not easily accessible, liquid biopsies targeting tumor-specific EVs in blood might allow monitoring of therapy responses or help characterizing the primary tumor without the need for invasive procedures 6.
Indeed, EVs have already been successfully isolated from various body fluids including urine 7, CSF 8, breast milk 9 or blood 10. Several studies identified changes in EV counts and composition in different human diseases. For example, in sepsis patients the number of pro-coagulant MVs is significantly increased compared to healthy individuals 11. Also in patients with severe cerebral malaria an increase in total MVs in blood can be observed and counts of platelet-derived MVs correlate with coma depth and thrombocytopenia 12. Other studies report elevated numbers of endothelium-derived vesicles in patients with systemic lupus erythematosus or heart failure and in the case of the latter, this correlates with a higher probability of cardiovascular events 13,14.
Especially in cancer, EVs in blood are currently discussed as novel biomarkers with diagnostic and prognostic value. Levels of MVs expressing tumor-associated proteins such as MUC1, EGFR or FAK seem to be elevated in the blood of breast cancer patients 15,16. Also for Exos, recent studies have shown that blood-derived Exos carrying tumor-specific antigens such as Glypican-1 for pancreatic cancer or Del-1 for breast cancer allow early disease detection with high specificity and sensitivity 17,18. Additionally, serum-derived tumor Exos may contain DNA which can be used for detection of mutations such as KRAS and p53 which suggests their use for therapy prediction 19. Recent advances have shown that analysis of Exos in blood of glioblastoma patients using a specific microfluidic chip allows monitoring of therapy 20. Taken together, these findings imply that analysis of disease-specific subpopulations of vesicles gives valuable information about diagnosis, prognosis as well as therapeutic options and success.
However, isolation and analysis of Exos from blood is time-consuming, requires special lab equipment and therefore is not yet suited for routine clinical diagnostics. In contrast, MVs can be isolated much faster and, due to their larger size, can be easily analyzed by flow cytometry without the need to couple them to latex beads as it is necessary for Exos 18,21. Thus, here we present a protocol that can be used for the standardized isolation of MVs from blood samples and the subsequent characterization of MV subpopulations by flow cytometry. This protocol will allow the further study and in depth characterization of MV profiles in large patient groups which will be required in order to use MVs for everyday clinical diagnostics.

<table><tbody><tr><td>butterfly needle (21 gauge)</td><td>Hospira Deutschland GmbH</td><td>490P29201</td><td></td></tr><tr><td>Bovine serum albumin Fraction V</td><td>Roth</td><td>8076.3</td><td>For 10x TBS weigh 24.2 g Tris base and 80 g NaCl, ad 1 L H&lt;sub&gt;2&lt;/sub&gt;O and adjust pH to 7.6</td></tr><tr><td colspan="4">For 1x TBS-T mix 100 mL 10x TBS with 900 mL H&lt;sub&gt;2&lt;/sub&gt;O and add 1 mL Tween-20</td></tr><tr><td>CD235a-PE</td><td>Beckman Coulter</td><td>A07792</td><td>use 5 &amp;micro;l for staining</td></tr><tr><td>CD45-FITC</td><td>Beckman Coulter</td><td>7782</td><td>use 5 &amp;micro;l for staining</td></tr><tr><td>CD62E-PE</td><td>Biolegend</td><td>336008</td><td>use 0.8 &amp;micro;g for staining</td></tr><tr><td>CD62P-PE</td><td>Biolegend</td><td>304905</td><td>use 0.1 &amp;micro;g for staining</td></tr><tr><td>CD81 antibody</td><td>Biolegend</td><td>349501</td><td>1:2,000 in 5% BSA in TBS-T; use non-reducing conditions for Western Blotting</td></tr><tr><td>CD9 antibody</td><td>Immunotools</td><td>21270091</td><td>1:1,000 in 5% BSA in TBS-T; use non-reducing conditions for Western Blotting</td></tr><tr><td>Chemiluminescence imager ImageQuant LAS-4000</td><td>Fujitsu Life Sciences</td><td></td><td></td></tr><tr><td>DC protein assay kit II</td><td>Bio-Rad</td><td>5000112</td><td></td></tr><tr><td>ECL detection reagent</td><td>GE Healthcare</td><td>RPN2232</td><td></td></tr><tr><td>EDTA vacutainers for blood collection</td><td>Sarstedt</td><td>01.1605.001</td><td></td></tr><tr><td>FACSCanto II</td><td>BD Biosciences</td><td></td><td></td></tr><tr><td>fetal calf serum (FCS)</td><td>Invitrogen</td><td>10091148</td><td>heat-inactivated (30 min, 56 &amp;deg;C)</td></tr><tr><td>filter 0.22 &amp;micro;m</td><td>Sarstedt</td><td>83.1826.001</td><td></td></tr><tr><td>HRP-coupled anti-mouse secondary antibody</td><td>santa cruz</td><td>sc-2005</td><td>use 1:10,000 in 5% milk powder in TBS-T</td></tr><tr><td>HRP-coupled anti-rabbit secondary antibody</td><td>santa cruz</td><td>sc-2004</td><td>use 1:10,000 in 5% milk powder in TBS-T</td></tr><tr><td>4x Laemmli loading buffer, Roti-Load 1</td><td>Roth</td><td>K929.1</td><td></td></tr><tr><td>microfuge SIGMA 1-15K</td><td>Sigma Laborzentrifugen</td><td></td><td></td></tr><tr><td>milk powder (Blotting-Grade Blocker, nonfat dry milk)</td><td>BioRad</td><td>170-6404</td><td></td></tr><tr><td>multifuge 3 L-R</td><td>Heraeus</td><td></td><td></td></tr><tr><td>NanoSight LM10</td><td>NanoSight Ltd.</td><td></td><td></td></tr><tr><td>PBS, w/o Ca and Mg</td><td>Pan biotech</td><td>P04-36500</td><td></td></tr><tr><td>perfusor syringe 50 mL</td><td>Braun</td><td>8728844F</td><td></td></tr><tr><td>Ponceau-S staining solution</td><td>PanReac AppliChem</td><td>A2935,0500</td><td></td></tr><tr><td>rotor Sw32.1 Ti for ultracentrifugation (6 x 17 mL)</td><td>Beckman Coulter</td><td></td><td></td></tr><tr><td>rotor TLA-120.2 for ultracentrifugation (10 x 1.5 mL)</td><td>Beckman Coulter</td><td></td><td></td></tr><tr><td>tubes for flow cytometry (5 mL, round-bottom)</td><td>BD Biosciences</td><td>352054</td><td></td></tr><tr><td>tubes for ultracentrifugation (15 mL)</td><td>Beckman Coulter</td><td>344061</td><td></td></tr><tr><td>tubes for ultracentrifugation (11* 34 mm)</td><td>Beckman Coulter</td><td>343778</td><td></td></tr><tr><td>Tubulin antibody</td><td>Millipore</td><td>05-829</td><td>1:5,000 in 5%BSA in TBST</td></tr><tr><td>ultracentrifuge Optima L-80 XP</td><td>Beckman Coulter</td><td></td><td></td></tr><tr><td>ultracentrifuge TL-100</td><td>Beckman Coulter</td><td></td><td></td></tr><tr><td>valve filter Seraplas V15</td><td>Sarstedt</td><td>53,428</td><td></td></tr></tbody></table>

isolation and characterization of microvesicles from peripheral blood

The release of extracellular vesicles (EVs) including small endosomal-derived exosomes (Exos, diameter &#60; 100 nm) and large plasma membrane-derived microvesicles (MVs, diameter &#62; 100 nm) is a fundamental cellular process that occurs in all living cells. These vesicles transport proteins, lipids and nucleic acids specific for their cell of origin and in vitro studies have highlighted their importance as mediators of intercellular communication. EVs have been successfully isolated from various body fluids and especially EVs in blood have been identified as promising biomarkers for cancer or infectious diseases. In order to allow the study of MV subpopulations in blood, we present a protocol for the standardized isolation and characterization of MVs from peripheral blood samples. MVs are pelleted from EDTA-anticoagulated plasma samples by differential centrifugation and typically possess a diameter of 100 - 600 nm. Due to their larger size, they can easily be studied by flow cytometry, a technique that is routinely used in clinical diagnostics and available in most laboratories. Several examples for quality control assays of the isolated MVs will be given and markers that can be used for the discrimination of different MV subpopulations in blood will be presented.

In order to quantify the yield of MVs that can be isolated following the described protocol, we calculated the amount of MVs isolated from blood samples of 10 donors. The MV yield, which was assessed in a Lowry protein assay, ranged from 10 up to 30 &#181;g with a mean of 19.2 &#181;g MVs per mL blood (Table 1). The particle concentration determined by nanoparticle tracking analysis (NTA) ranged from 1.66 x 109 to 2.36 x 1010 with a mean of 5.9 x 109 particles per mL plasma sample (Table 2). Further characterization of the MVs by transmission electron microscopy revealed a population of vesicles with a diameter &#62; 100 nm that were surrounded by a lipid bilayer and did not contain any cell organelles (Figure 1A). NTA confirmed that the size of the isolated MVs ranged from 100 up to 600 nm (Figure 1B) and the mean MV size was 201 nm (Figure 1C). Staining for typical MV and Exo markers by Western Blotting demonstrated that the isolated MVs were positive for Tubulin and only showed a slight expression of CD9 and CD81, while Exos were negative for Tubulin and enriched in CD9 and CD81 (Figure 2).
Analysis of the isolated MVs by flow cytometry (Figure 3A) revealed a defined vesicle population that could be gated using the same parameters normally used for MVs isolated from cell culture supernatants and that was clearly different from the background signal obtained by the measurement of PBS + 1% vesicles-depleted FCS without addition of MVs (Figure 3B). In order to analyze the different MV populations present in blood, MVs were stained with established markers for the different blood cell populations, e.g., CD62P for platelet-derived MVs, CD45 for leukocyte-derived MVs, CD235a for red blood cell-derived MVs and CD62E for endothelial cell-derived MVs (Figure 4). This characterization showed that the percentage of MV subpopulations differed among the investigated donor blood samples, while the majority of MVs seemed to be shed by platelets in all samples.
<img alt="Figure 1" src="/files/ftp_upload/55057/55057fig1.jpg" /> 
Figure 1: Size Distribution of MVs Isolated from Peripheral Blood. A, Isolated MVs were visualized by transmission electron microscopy. B, Representative nanoparticle tracking analysis (NTA) of MVs illustrating the size distribution of the vesicles. C, The mean MV size from 10 independent preparations was measured by NTA (mean). <a href="https://cloudflare-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/55057/55057fig1large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 2" src="/files/ftp_upload/55057/55057fig2.jpg" /> 
Figure 2: Characterization of Isolated MVs by Western Blotting. Differential protein expression on the isolated MVs and Exos from two donors was visualized by Western Blotting. <a href="https://cloudflare-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/55057/55057fig2large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 3" src="/files/ftp_upload/55057/55057fig3.jpg" /> 
Figure 3: Analysis of MVs by Flow Cytometry. A, MVs are first visualized on forward (FSC) versus sidescatter (SSC) plots to gate on the respective MV population. Subsequently, these MVs are characterized for the antigen of interest by using fluorescently labeled antibodies directed against the antigen. B, Typical FSC versus SSC plots for MVs isolated from the plasma of two donors. As comparison, a typical plot for tumor cell-derived MVs from A549 lung cancer cells isolated from cell culture supernatant as well as a negative control using only PBS + 1% vesicle-depleted FCS without MVs are shown on the right. <a href="https://cloudflare-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/55057/55057fig3large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 4" src="/files/ftp_upload/55057/55057fig4.jpg" /> 
Figure 4: Characterization of Isolated MVs by Flow Cytometry. MVs from three donors were characterized for the expression of established blood cell markers (red) by flow cytometry. The respective isotype controls are shown in grey. <a href="https://cloudflare-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/55057/55057fig4large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>Sample</td>
			<td>MVs/mL blood [&#181;g]</td>
		</tr>
		<tr>
			<td>#1</td>
			<td>29.4</td>
		</tr>
		<tr>
			<td>#2</td>
			<td>10.3</td>
		</tr>
		<tr>
			<td>#3</td>
			<td>15.2</td>
		</tr>
		<tr>
			<td>#4</td>
			<td>31.1</td>
		</tr>
		<tr>
			<td>#5</td>
			<td>18.8</td>
		</tr>
		<tr>
			<td>#6</td>
			<td>22.7</td>
		</tr>
		<tr>
			<td>#7</td>
			<td>19.1</td>
		</tr>
		<tr>
			<td>#8</td>
			<td>18.7</td>
		</tr>
		<tr>
			<td>#9</td>
			<td>15.0</td>
		</tr>
		<tr>
			<td>#10</td>
			<td>11.9</td>
		</tr>
	</tbody>
</table>
Table 1: MV Protein Yield from Peripheral Blood Samples. Shown is the amount of MVs per mL peripheral blood that was drawn from 10 donors. MV yields were quantified by Lowry assay.
<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>Sample</td>
			<td>MVs/mL plasma [particle count]</td>
		</tr>
		<tr>
			<td>#1</td>
			<td>6.42E+09</td>
		</tr>
		<tr>
			<td>#2</td>
			<td>2.36E+10</td>
		</tr>
		<tr>
			<td>#3</td>
			<td>1.88E+09</td>
		</tr>
		<tr>
			<td>#4</td>
			<td>6.51E+09</td>
		</tr>
		<tr>
			<td>#5</td>
			<td>3.48E+09</td>
		</tr>
		<tr>
			<td>#6</td>
			<td>4.57E+09</td>
		</tr>
		<tr>
			<td>#7</td>
			<td>2.09E+09</td>
		</tr>
		<tr>
			<td>#8</td>
			<td>1.66E+09</td>
		</tr>
		<tr>
			<td>#9</td>
			<td>2.54E+09</td>
		</tr>
		<tr>
			<td>#10</td>
			<td>6.20E+09</td>
		</tr>
	</tbody>
</table>
Table 2: MV Particle Yield from Peripheral Blood Samples. MV were isolated from plasma samples of 10 donors and particle counts were determined by nanoparticle tracking analysis. Shown is the mean value from three independent measurements.

Watch this Scientific Journal Video about Isolation and Characterization of Microvesicles from Peripheral Blood at JoVE.com

Isolation and Characterization of Microvesicles from Peripheral Blood

Extracellular vesicles present in blood have been suggested as novel biomarkers for various diseases. Here, we present a protocol for the isolation of large plasma membrane-derived microvesicles from peripheral blood samples and their subsequent analysis by conventional flow cytometry and Western Blotting.

The release of extracellular vesicles (EVs) including small endosomal-derived exosomes (Exos, diameter &#60; 100 nm) and large plasma membrane-derived ...

isolation-and-characterization-of-microvesicles-from-peripheral-blood

Nanyang Technological University

Research

JoVE Journal

Biology

23.0K Views.  University Medical Center Göttingen. Extracellular vesicles present in blood have been suggested as novel biomarkers for various diseases. Here, we present a protocol for the isolation of large plasma membrane-derived microvesicles from peripheral blood samples and their subsequent analysis by conventional flow cytometry and Western Blotting. 

Video: Isolation and Characterization of Microvesicles from Peripheral Blood

Rapid Fluorescence-based Characterization of Single Extracellular Vesicles in Human Blood with Nanoparticle-tracking Analysis

Extracellular vesicles (EVs), including exosomes, are specialized membranous nano-sized vesicles found in bodily fluids that are constitutively released from many cell types and play a pivotal role in regulating cell-cell communication and a diverse range of biological processes. Many different methods for the characterization of EVs have been described. However, most of these methods have the disadvantage that the preparation and characterization of the samples are very time-consuming, or it is extremely difficult to analyze specific markers of interest due to their small size and due to the lack of discrete populations. While methods for analysis of EVs have been considerably improved over the last decade, there is still no standardized method for characterization of single EVs. Here, we demonstrate a semi-automated method for characterization of single EVs by fluorescence-based nanoparticle-tracking analysis. The protocol that is presented addresses the common problem of many researchers in this field and provides the complete workflow for rapid isolation of EVs and characterization with PKH67, a general cell membrane linker, as well as with specific surface markers such as CD63, CD9, vimentin, and lysosomal-associated membrane protein 1 (LAMP-1). The presented results show a high level of reproducibility, as confirmed by other methods, such as Western blotting. In the conducted experiments, we exclusively used EVs isolated from human serum samples, but this method is also suitable for plasma or other body fluids and can be adjusted for characterization of EVs from cell culture supernatants. Irrespective of the future progress of research on EV biology, the protocol that is presented here provides a rapid and reliable method for rapid characterization of single EVs with specific markers.

In this protocol, we describe the complete workflow for rapid isolation of extracellular vesicles from human whole blood and characterization of specific markers by fluorescence-based nanoparticle-tracking analysis. The presented results show a high level of reproducibility and can be adjusted to cell culture supernatants.

Extracellular vesicles (EVs), including exosomes, are specialized membranous nano-sized vesicles found in bodily fluids that are constitutively released ...

Biochemistry

Isolating Human Peripheral Blood Mononuclear Cells and CD4+ T cells from S&#233;zary Syndrome Patients for Transcriptomic Profiling

Cutaneous T-cell lymphomas (CTCL) are derived from the transformation and uncontrolled proliferation of mature skin-homing T cells, and mycosis fungoides (MF) and S&#233;zary syndrome (SS) represent the most common subtypes. Despite a number of studies on characterizing gene expression, genetic alterations, and epigenetic abnormalities of CTCL, the molecular pathogenesis of MF/SS remains unclear. MF refers to the more common CTCL with a skin-predominance, and is usually limited to skin, whereas&#160;SS is an aggressive leukemic variant of CTCL with widespread skin involvement and is characterized by neoplastic distribution mainly involving blood, skin, and lymph node. Focusing on clinical practice, the identification of gene expression biomarkers has&#160;enormous potential to improve diagnosis and treatment of MF/SS. Indeed, recent transcriptomic studies have identified potential diagnostic biomarkers from differences in gene expression between normal and malignant T cells, which may improve our understanding of SS biology, and reveal potential therapeutic targets. This manuscript describes a detailed reproducible protocol for the isolation of peripheral blood mononuclear cells from fresh whole blood from patients diagnosed with SS, selection of CD4+ memory T cells (CD4+CD45RO+ T cells), chemical stimulation, and preparation of RNA suitable for transcriptomic profiling to discover novel prognostic molecular markers to gain additional insight in disease etiology. The stimulation using chemical agonist to activate nuclear regulation provides more specific assessment for pathways important in the dynamic transcription regulation and gene expression and eliminates confounding defects that may arise from upstream signaling defects arising from TCR antigen loss at the cell membrane. The data obtained from comparison of transcriptome of unstimulated to stimulated SS T cells unmasks functional regulatory gene expression defects not evident from analysis of quiescent unstimulated cells. Furthermore, the method outlined from this approach can be adapted for studying T cell gene expression defects in other T cell immune diseases.

We present a simple protocol for the isolation of peripheral blood mononuclear cells from whole blood obtained from patients diagnosed with S&#233;zary Syndrome, followed by selection of CD4+ T cells, their stimulation with phorbol12-myristate13-acetate and A23187 ionophore, and preparation of RNA for transcriptomic profiling.

Cutaneous T-cell lymphomas (CTCL) are derived from the transformation and uncontrolled proliferation of mature skin-homing T cells, and mycosis fungoides ...

Cancer Research

Paper-based Devices for Isolation and Characterization of Extracellular Vesicles

Extracellular vesicles (EVs), membranous particles released from various types of cells, hold a great potential for clinical applications. They contain nucleic acid and protein cargo and are increasingly recognized as a means of intercellular communication utilized by both eukaryote and prokaryote cells. However, due to their small size, current protocols for isolation of EVs are often time consuming, cumbersome, and require large sample volumes and expensive equipment, such as an ultracentrifuge. To address these limitations, we developed a paper-based immunoaffinity platform for separating subgroups of EVs that is easy, efficient, and requires sample volumes as low as 10 &#956;l. Biological samples can be pipetted directly onto paper test zones that have been chemically modified with capture molecules that have high affinity to specific EV surface markers. We validate the assay by using scanning electron microscopy (SEM), paper-based enzyme-linked immunosorbent assays (P-ELISA), and transcriptome analysis. These paper-based devices will enable the study of EVs in the clinic and the research setting to help advance our understanding of EV functions in health and disease.

This protocol details a method to isolate extracellular vesicles (EVs), small membranous particles released from cells, from as little as 10 &#956;l serum samples. This approach circumvents the need for ultracentrifugation, requires only a few minutes of assay time, and enables the isolation of EVs from samples of limited volumes.

Extracellular vesicles (EVs), membranous particles released from various types of cells, hold a great potential for clinical applications. They contain ...

Bioengineering

Isolation of Exosomes from the Plasma of HIV-1 Positive Individuals

Exosomes are small vesicles ranging in size from 30 nm to 100 nm that are released both constitutively and upon stimulation from a variety of cell types. They are found in a number of biological fluids and are known to carry a variety of proteins, lipids, and nucleic acid molecules. Originally thought to be little more than reservoirs for cellular debris, the roles of exosomes regulating biological processes and in diseases are increasingly appreciated.
Several methods have been described for isolating exosomes from cellular culture media and biological fluids. Due to their small size and low density, differential ultracentrifugation and/or ultrafiltration are the most commonly used techniques for exosome isolation. However, plasma of HIV-1 infected individuals contains both exosomes and HIV viral particles, which are similar in size and density. Thus, efficient separation of exosomes from HIV viral particles in human plasma has been a challenge.
To address this limitation, we developed a procedure modified from Cantin et. al., 2008 for purification of exosomes from HIV particles in human plasma. Iodixanol velocity gradients were used to separate exosomes from HIV-1 particles in the plasma of HIV-1 positive individuals. Virus particles were identified by p24 ELISA. Exosomes were identified on the basis of exosome markers acetylcholinesterase (AChE), and the CD9, CD63, and CD45 antigens. Our gradient procedure yielded exosome preparations free of virus particles. The efficient purification of exosomes from human plasma enabled us to examine the content of plasma-derived exosomes and to investigate their immune modulatory potential and other biological functions.

Techniques describing a gradient procedure to separate exosomes from human immunodeficiency virus (HIV) particles are described. This procedure was used to isolate exosomes away from HIV particles in human plasma from HIV-infected individuals. The isolated exosomes were analyzed for cytokine/chemokine content.

Exosomes are small vesicles ranging in size from 30 nm to 100 nm that are released both constitutively and upon stimulation from a variety of cell types. ...

Immunology and Infection

Isolation and Profiling of MicroRNA-containing Exosomes from Human Bile

Exosome research in the last three years has greatly extended the scope towards identification and characterization of biomarkers and their therapeutic uses.
Exosomes have recently been shown to contain microRNAs (miRs). MiRs themselves have arisen as valuable biomarkers for diagnostic purposes. As specimen collection in clinics and hospitals is quite variable, miRNA isolation from whole bile varies substantially. To achieve robust, accurate and reproducible miRNA profiles from collected bile samples in a simple manner required the development of a high-quality protocol to isolate and characterize exosomes from bile. The method requires several centrifugations and a filtration step with a final ultracentrifugation step to pellet the isolated exosomes. Electron microscopy, Western blots, flow cytometry and multi-parameter nanoparticle optical analysis, where available, are crucial characterization steps to validate the quality of the exosomes. For the isolation of miRNA from these exosomes, spiking the lysate with a non-specific, synthetic miRNA from a species like Caenorhabditis elegans, i.e., Cel-miR-39, is important for normalization of RNA extraction efficiency. The isolation of exosome from bile fluid following this method allows the successful miRNA profiling from bile samples stored for several years at -80 &#176;C.

Bile fluid is a valuable source of extracellular vesicles/exosomes that contain potentially important biomarkers. This protocol represents a robust method to isolate exosomes from human bile for further analyses including miRNA profiling.

Exosome research in the last three years has greatly extended the scope towards identification and characterization of biomarkers and their therapeutic ...

Medicine

Isolation and Characterization of Extracellular Vesicles Produced by Iron-limited Mycobacteria

Mycobacteria, including Mycobacterium tuberculosis (Mtb), the causative agent of human tuberculosis, naturally release extracellular vesicles (EVs) containing immunologically active molecules. Knowledge regarding the molecular mechanisms of vesicle biogenesis, the content of the vesicles, and their functions at the pathogen-host interface is very limited. Addressing these questions requires rigorous procedures for isolation, purification, and validation of EVs. Previously, vesicle production was found to be enhanced when M. tuberculosis was exposed to iron restriction, a condition encountered by Mtb in the host environment. Presented here is a complete and detailed protocol to isolate and purify EVs from iron-deficient mycobacteria. Quantitative and qualitative methods are applied to validate purified EVs.

Mycobacterium tuberculosis shows increased production and release of extracellular vesicles in response to low iron conditions. This work details a protocol for generating low iron conditions and methods for the purification and characterization of mycobacterial extracellular vesicles released in response to iron deficiency.

Mycobacteria, including Mycobacterium tuberculosis (Mtb), the causative agent of human tuberculosis, naturally release extracellular vesicles (EVs) ...

Isolation of Splenic Microvesicles in a Murine Model of Intraperitoneal Bacterial Infection

Microvesicles (MVs) are submicron fragments released from the plasma membrane of activated cells that act as proinflammatory and procoagulant cellular effectors. In rats, spleen MVs (SMVs) are surrogate markers of pathophysiological conditions. Previous in vitro studies demonstrated that Porphyromonas gingivalis (P. gingivalis), a major periodontal pathogen, enables&#160;the endothelial shedding and apoptosis while lipopolysaccharide (LPS) favors the shedding of splenocyte-derived microvesicles (SMVs). In vivo studies showed the feasibility of pharmacological control of SMV shedding. The present protocol establishes a standardized procedure for isolating splenic SMVs from the P. gingivalis acute murine infection model.&#160;P. gingivalis infection was induced in young C57BL/6 mice by intraperitoneal injection (three injections of 5 x 107 bacteria/week). After two weeks, the spleens were collected, weighed, and the splenocytes were counted. SMVs were isolated and quantified by protein, RNA, and prothrombinase assays. Cell viability was assessed by either propidium iodide or trypan blue exclusion dyes. Following splenocyte extraction, neutrophil counts were obtained by flow cytometry after 24 h of splenocyte culture. In P. gingivalis-injected mice, a 2.5-fold increase in spleen weight and a 2.3-fold rise in the splenocyte count were observed, while the neutrophils count was enhanced by 40-folds. The cell viability of splenocytes from P. gingivalis-injected mice ranged from 75%-96% and was decreased by 50% after 24 h of culture without any significant difference compared to unexposed controls. However, splenocytes from injected mice shed higher amounts of MVs by prothrombinase assay or protein measurements. The data demonstrate that the procoagulant SMVs are reliable tools to assess an early spleen response to intraperitoneal&#160;P. gingivalis infection.

Microvesicles shed from the plasma membrane act as cellular effectors. Spleen microvesicles (SMVs) are surrogate markers of pathophysiological conditions. In rats and mice, SMV content and properties characterize aging or inflammation and are altered by cytoprotective treatments, making them a valuable yet abundant monitoring tool for preclinical research.

Microvesicles (MVs) are submicron fragments released from the plasma membrane of activated cells that act as proinflammatory and procoagulant cellular ...

Isolation and Analysis of Traceable and Functionalized Extracellular Vesicles from the Plasma and Solid Tissues

Circulating and tissue-resident extracellular vesicles (EVs) represent promising targets as novel theranostic biomarkers, and they emerge as important players in the maintenance of organismal homeostasis and the progression of a wide spectrum of diseases. While the current research focuses on the characterization of endogenous exosomes with the endosomal origin, microvesicles blebbing from the plasma membrane have gained increasing attention in health and sickness, which are featured by an abundance of surface molecules recapitulating the membrane signature of parent cells. Here, a reproducible procedure is presented based on differential centrifugation for extracting and characterizing EVs from the plasma and solid tissues, such as the bone. The protocol further describes subsequent profiling of surface antigens and protein cargos of EVs, which are thus traceable for their derivations and identified with components related to potential function. This method will be useful for correlative, functional, and mechanistic analysis of EVs in biological, physiological, and pathological studies.

The present protocol describes a method to extract extracellular vesicles from the peripheral blood and solid tissues with subsequent profiling of surface antigens and protein cargos.

Circulating and tissue-resident extracellular vesicles (EVs) represent promising targets as novel theranostic biomarkers, and they emerge as important ...

Isolation, Characterization, and Therapeutic Application of Extracellular Vesicles from Cultured Human Mesenchymal Stem Cells

Extracellular vesicles (EVs) are heterogeneous membrane nanoparticles released by most cell types, and they are increasingly recognized as physiological regulators of organismal homeostasis and important indicators of pathologies; in the meantime, their immense potential to establish accessible and controllable disease therapeutics is emerging. Mesenchymal stem cells (MSCs) can release large amounts of EVs in culture, which have shown promise to jumpstart effective tissue regeneration and facilitate extensive therapeutic applications with good scalability and reproducibility. There is a growing demand for simple and effective protocols for collecting and applying MSC-EVs. Here, a detailed protocol is provided based on differential centrifugation to isolate and characterize representative EVs from cultured human MSCs, exosomes, and microvesicles for further applications. The adaptability of this method is shown for a series of downstream approaches, such as labeling, local transplantation, and systemic injection. The implementation of this procedure will address the need for simple and reliable MSC-EVs collection and application in translational research.

The present protocol describes the differential centrifugation for isolating and characterizing representative EVs (exosomes and microvesicles) from cultured human MSCs. Further applications of these EVs are also explained in this article.

Extracellular vesicles (EVs) are heterogeneous membrane nanoparticles released by most cell types, and they are increasingly recognized as physiological ...

Cardiovascular Biomarker Studies Using Plasma Extracellular Vesicle Proteome

Isolation, Characterization, and Proteomic Analysis of Plasma-Derived Extracellular Vesicles for Cardiovascular Biomarker Discovery

Extracellular vesicles (EV) are cell-derived, lipid bilayer-enclosed, non-replicable nanoparticles. EV currently gain attention in cardiovascular research due to their role in regulating intercellular communication, potentially serving as valuable biomarkers for cardiovascular disease. However, the EV proteome and its potential as a biomarker in cardiovascular diagnostics remain poorly understood. This protocol presents a standardized method for the isolation and quantification of plasma-derived EV and the analysis of their protein cargo using plasma samples from patients presenting to the Chest Pain Unit of a large university hospital. Following routine phlebotomy, EV are isolated from plasma by differential ultracentrifugation. The enrichment of specific EV marker proteins in EV isolates is visualized by immunoblotting, and average size distribution and plasma EV concentrations are quantified by nanoparticle tracking analysis. Finally, ultra-performance liquid chromatography-tandem mass spectrometry is employed for label-free analysis of the EV proteome. This protocol thus provides a comprehensive approach to study and use plasma-derived EV as potential carriers of critical biological information as well as to explore their potential as novel biomarkers.

Author Spotlight: Advancing the Analysis of Plasma Extracellular Vesicle Proteome for Cardiovascular Biomarker Studies

This article describes a methodology for the isolation, characterization, and quantification of human plasma-derived extracellular vesicles (EV) and presents a workflow for label-free analysis of the EV proteome using liquid chromatography-tandem mass spectrometry (LC-MS/MS).

Extracellular vesicles (EV) are cell-derived, lipid bilayer-enclosed, non-replicable nanoparticles. EV currently gain attention in cardiovascular research ...

Isolation and Characterization of Microvesicles from Peripheral Blood

Samenvatting

Meer video's verkennen

Hoofdstukken in deze video