This work was supported by The Royal Society UK (Grant no. IEC\NSFC\201094), and a Commonwealth Ph.D. Scholarship.

NOTE: The protocol describes the western blotting method to detect specific proteins of interest.
1. Cell culture and transfection
<ol>
	<li>Warm all the reagents in the bead bath (37 &#730;C) before the cell culture procedure. Prepare culture medium, Dulbecco&#39;s Modified Eagle Medium (DMEM), supplemented with 10% fetal bovine serum, 1% each of 2mM L-glutamine, 100x non-essential amino acid, 100 mM sodium pyruvate, and 100 units/mL penicillin-streptomycin.</li>
	<li>Thaw stably transfected rat KCC2b human embryonic kidney 293 cells (HEK293rnKCC2b)18 completely in the bead bath (37 &#730;C). Transfer the cells from the cryovial tube into a centrifuge tube containing 5 mL of fresh media. Spin the cell at 1200 &#215;g for 3-5 min.</li>
	<li>Use an aspirator pipette (fixed to a vacuum pump) to aspirate the supernatant and add 10 mL of fresh media to re-suspend the cells. Transfer the cell suspension to a 10 cm dish plate.</li>
	<li>Place the dish into the incubator and allow it to grow for 48 h at 37 &#176;&#1057; in a humidified 5% CO2 atmosphere. Monitor the incubation period to ensure healthy cell growth. Further split the cells when they have attained over 90% confluence after the incubation period.</li>
	<li>Aspirate the old media out from the cells dish and gently rinse cells with 2 mL of phosphate buffer saline (PBS). Add 2 mL of trypsin and incubate for about 1-2 min at room temperature.</li>
	<li>Use 2 mL of complete media to gently wash the trypsinized cells in the dish. Add 9 mL of fresh media to new dishes and add 1 mL solution from the old dish to each of the new ones. Transfer the split cell dishes back to the incubator for 48 h to attain &#8805; 90% confluency.</li>
	<li>Treat the cells with either dimethyl sulfoxide (DMSO) as control, 8 &#181;M staurosporine, or 0.5 mM N-ethylmaleimide (NEM) for 15 min before harvesting the cells in lysis buffer.</li>
</ol>
2. Preparation of cell lysates and loading samples
<ol>
	<li>Aspirate the media on the culture dish (from transfection procedures). Place the cell culture on ice and wash the cells with ice-cold PBS.</li>
	<li>Aspirate the PBS, then add 1.0 mL of ice-cold lysis buffer containing 50 mM tris-HCl (pH 7.5), 1 mM ethylene glycol-bis(&#946;-aminoethyl ether)-N,N,N&#8242;,N&#8242;-tetraacetic acid (EGTA), 1 mM ethylenediaminetetraacetic acid (EDTA), 50 mM sodium fluoride, 5 mM sodium pyrophosphate, 10 mM sodium-&#946;-glycerophosphate, 1 mM sodium orthovanadate, 1% (w/v) Triton X-100, 0.27 M sucrose, 1 mM benzamine, 0.1% (v/v) 2-mercaptoethanol, and 2 mM phenylmethylsulfonylfluoride (PMSF) to the dish. 
	NOTE: The volume of lysis buffer during cell harvest varies with dish sizes, for example, 1 mL of lysis buffer is suitable per 1 x 107 cells/100 mm dish/150 cm2 flask, while 0.5 mL is suitable per 5 x 106 cells/60 mm dish/75 cm2 flask.</li>
	<li>Use a cold plastic cell scraper to scrape the cells off the bottom of the dish, then gently use a pipette to transfer the cell suspension into a micro-centrifuge tube already on ice. Constantly agitate the tube for 30 min at 4 &#176;C.</li>
	<li>Spin the cell lysates in a cold centrifuge (4 &#176;C) at 16,000 x g for 20 min, remove the tube gently from the centrifuge, and place it on ice. Collect the supernatant into a pre-cooled fresh tube and discard the pellet. 
	NOTE: It may be necessary to vary the centrifugation force and time depending on the cell type. Though, general guidelines encourage centrifugation at 16,000 x g for 20 min. However, this must be determined for every experiment. For instance, delicate cells like leukocytes need a very light centrifugation speed.</li>
</ol>
3. Preparation of immunoprecipitants from cell lysates
<ol>
	<li>Pipette 300 &#181;L of protein-G-sepharose into a microcentrifuge tube. Spin the solution at 500 x g for 2 min and discard the supernatant.</li>
	<li>Add 500 &#181;L of PBS and vortex the solution well. Spin the solution at 500 x g for 2 min and discard the supernatant. Repeat this step.</li>
	<li>Mix 1 mg of anti-KCC2 Thr906 and anti-KCC2 Thr1007 antibodies with 200 &#181;L of protein G-sepharose beads and make up the volume to 500 &#181;L with PBS. Shake on a vibrating platform or rotating wheel for 2 h at 4 &#176;C. Wash 2x with PBS.</li>
	<li>Carry out protein quantification on the whole cell lysates and add 1 mg of the cell lysate to the washed beads. Gently incubate in an end-to-end rotator for 2 h at 4 &#176;C. Spin down the beads and wash them 3x with PBS containing 150 mM sodium chloride (NaCl).</li>
	<li>Wash immunoprecipitants (beads) 3x with 200 &#181;L of PBS. Resuspend the final pellet in 100 &#956;L of 1x lithium dodecyl sulfate (LDS) sample buffer.</li>
	<li>Shake the tubes in a rotor shaker at room temperature for 5 min and incubate them in a heating block at 75 &#176;C for 10 min. Centrifuge the loading sample at 11,000 x g for 2 min and use the supernatant for gel loading.</li>
</ol>
4. Performing the western blot
<ol>
	<li>Assemble the casting apparatus and pour freshly prepared 8% separating gel (see Table 1 for recipe/preparation) to cast the gel allowing about 2 cm of space from the top of the casting glass. Add 200 &#181;L of absolute isopropanol to the setup and allow it to stand at room temperature for 60 min. 
	NOTE: The polyacrylamide gel recipe for sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) depends on the size of the protein of interest (Table 2). Hence, make a note of the protein size before determining the desired gel percentage.</li>
	<li>Use a pipette to remove the isopropanol and carefully rinse the gel with about 200 &#181;L of distilled water. Add freshly prepared 6% stacking gel (see Table 1 for recipe/preparation) to fill up the approximately 2 cm space on the casting setup. Gently fit in the well comb and allow to stand at room temperature for 30 min.</li>
	<li>Fix the casted gel into the electrophoresis tank.</li>
	<li>Dissolve 30.3 g of Tris base, 144.1 g of glycine, and 10 g of SDS in 1000 mL of distilled water to prepare 10x transfer buffer. Prepare 1x running buffer by adding 10 mL of 10% SDS and 100 mL of 10x transfer buffer to 890 mL of distilled water.</li>
	<li>Pour 1x running buffer into the tank. Load 5 &#181;L of molecular weight marker into the first well and an equal amount of protein into each well of the SDS-PAGE gel (between 18-30 &#181;L, depending on the comb size used). Fill up empty wells with 1x LDS and run the gel for about 90-120 min at 120 V.</li>
	<li>Dissolve 58.2 g of Tris base and 29.3 g of glycine in 1000 mL of distilled water to prepare 10x transfer buffer. Activate nitrocellulose membrane with 1x transfer buffer containing 20% methanol. Rinse the gel and membrane with the transfer buffer and gently spread them out on the preparing stack. 
	NOTE: There is no need to adjust the pH of the running and transfer buffers as they should be at the optimum pH required. Also, it is advisable to prepare these buffers and store them at room temperature before the experiment to save time.</li>
	<li>Arrange the sandwich to be transferred in this order: negative electrode (black frame/end) - sandwich foam - filter paper - rinsed SDS-PAGE gel - rinsed nitrocellulose membrane - filter paper - sandwich foam - positive electrode (red frame). Stack the assembled sandwich in the transfer tank and run at 90 V for 90 min or 30 V for 360 min.</li>
</ol>
5. Antibody staining and image development
<ol>
	<li>Remove the membrane and let it dry. Block the membrane for 1 h at room temperature using a blocking buffer made from 5% skimmed milk in Tris-buffered saline containing 0.1% 1x Tween 20 (1x TBS-T).</li>
	<li>Incubate the membranes with appropriate dilutions of primary antibody8,15,19 and beta-actin (loading control) in blocking buffer for 1 h at room temperature or overnight at 4 &#176;C. Wash the membrane in three washes of 1x TBS-T for 5 min each. 
	NOTE: The incubation of the separate membrane with loading controls such as beta-actin, alpha-tubulin, or glyceraldehyde 3-phosphate dehydrogenase antibodies is to normalize the other western blotting results during subsequent quantification. The recommended dilution for each primary antibody is available in the manufacturer&#39;s manual.</li>
	<li>Incubate the washed membrane with secondary antibody diluted 5000-fold in blocking buffer for 60 min at room temperature. Again, wash the membrane 3x in 1x TBS-T for 5 min each. 
	NOTE: It is highly recommended that the secondary antibody must be raised against the species in which the primary antibody is raised. For example, if the primary antibody of total KCC2 is mouse anti-KCC2, then the secondary antibody for anti-mouse must be used.</li>
	<li>Place the washed membrane on the imaging board. Mix equal volumes of each enhanced chemiluminescence (ECL) reagent and gently spread the mixed solution on the membrane to develop signals.</li>
</ol>
6. Image acquisition using an imaging system and data quantification
<ol>
	<li>Transfer the imaging board to the appropriate compartment on the imaging system for imaging. Open the imaging software on the computer for image processing.</li>
	<li>On the toolbar, click New Protocol and choose Single Channel. Click Select under gel imaging/application dialog box, scroll to Blot and select either Chemi Hi Sensitivity or Chemi Hi Resolution. Then click on Signal Accumulation Setup to set the duration and number of images to acquire.</li>
	<li>Click Position Gel under protocol setup and adjust the gel in the imaging system if necessary. Click Run Protocol to acquire the images.</li>
	<li>Right-click on one of the acquired images under the imaging catalog box to save the images on the computer. Navigate to the desired image and click on Select Image and Continue under the run dialog box.</li>
	<li>Click on the Image Transform icon to adjust the contrast and the pixel saturation of the image. Click on the Screenshot icon on the general toolbar to save the image to the computer depending on the desired image format.</li>
	<li>Measure the band densities using ImageJ software and analyze using appropriate statistical tools.</li>
</ol>

The authors have nothing to disclose.

Many methods have been used to measure the activities of SLC12 of CCCs that are expressed in the neurons, including KCC2. Many of these techniques have proven to enhance scientific knowledge on the analysis of the functional relevance of these transporters and their structure-function patterns in different disease-related mutations. Critically, there are advantages and caveats to the various methods21. However, the protocol explained above, outlined how to assess KCC2 phosphorylation at kinase regulatory sites, Thr906 and Thr1007, using western blot, which can be helpful in studying the functions and activities of KCC2.
The regulation of KCC2 occurs through phosphorylation and dephosphorylation at key serine/threonine residues1. Western blotting is an efficient technique that can be used to investigate KCC2 phosphorylation at kinase regulatory sites at Thr906 and Thr1007. In principle, changes in the phosphorylation of KCC2 are detected using phospho-specific antibodies directed against phospho-peptides of the immunoblot samples/proteins of interest. Western blot is a method used to detect the specific protein of interest from a sample of tissue or cell. This method first separates the proteins by size through electrophoresis. The proteins are then electrophoretically transferred to a solid support (usually a membrane) before the target protein is marked using a specific antibody. The antibodies are conjugated to different tags or fluorophore-conjugated antibodies that are detected using either colorimetric, chemiluminescence, or fluorescence methods. This allows for a specific target protein to be detected from a mixture of proteins. This technique has been used to characterize phosphospecific sites of KCC22,8 and has been used to identify inhibitors of KCC2 that antagonize KCC2 Thr906/Thr1007 phosphorylation15. HEK293 lines have been in use for several experiments owing to their advantage in molecular biology experiments. They are quick to reproduce, easy to maintain, and highly efficient for transfection and protein production22. However, some opinions hold that it might not be the most suitable candidate for carrying out neurobiology experiments because it is not a cell sourced from the brain, and hence its physiological specificity may be questionable in neuroscience research. However, previous works have shown that similar results are observed in the expression of KCC2 in HEK293 cells and actual neuronal tissues/cells15,23. Hence, the relevance of HEK293 in neuroscience research may not be discarded outright.
In studies involving the analysis of protein expression by western blotting technique, specific attention should be given to the choice of lysis buffer composition, the nature (type and concentration) of the detergent to be used24, and the protease inhibitors. The composition of the buffer must be optimized to suit the target protein to facilitate its solubilization and extraction processes, and to allow its easy detection by western blot25. Mild detergent at low concentration is usually required for soluble proteins, while membrane proteins may require stronger detergent conditions. However, strong detergents may disrupt interactions and complexes may be lost. Both types and concentrations of the detergents may affect the nature and activity of the protein, hence, there is a need to stick to restricted/tolerated range of concentrations for these detergents. The addition of protease inhibitor will avert the target protein from being degraded by endogenous proteins, and the optimal recommended working temperature is 4 &#176;C to effectively decline proteolytic rates. Sometimes, in a bid to achieve high-quality immunoblot signals for antibodies that give poor immunoblot signals, immunoprecipitation (IP) is carried out as an upstream experiment for western blotting. This technique is advantageous because it facilitates the interaction between antigens and their respective antibodies in their native conformation preceding their consequent separation and quantification26. Hence, IP may enhance the quality of outputs from western blotting procedures. Prior to the application of the IP technique, it is important to assess the presence and efficiency of expression of the co-immunoprecipitated partner proteins in the lysate by analyzing either the whole cell lysate or input fractions by western blotting. Furthermore, prior knowledge of the molecular weight of the protein to be investigated is necessary before preparing the desired percentage gel solutions for SDS-PAGE electrophoresis as the size of the protein impacts the sieving effect of the gel matrix.
Though, the detection of protein-conjugated antibodies by this technique is highly instrumental as it helps to improve the understanding of cooperative activities at the phospho-sites of KCC2 which may provide information about the cotransporter phosphorylation and the integrity of the signaling pathway that may regulate the cotransporters, for a reliable prediction of cotransporter activity. However, it is important to note that the western blot technique is only able to produce semi-quantitative data, which means that the technique only highlights the relative assessment of protein expressions but not absolute quantification. This is accredited to discrepancies in the rates of sample loading and transfer in separate lanes, which are different on individual blots. The detected signal generated is also not linear and does not reflect the concentration range of samples27. Besides, phosphorylation status may not be a reliable factor for reporting protein activity as interventions such as inhibitors, mutations, and protein interactions with its environment can directly influence protein activity without changing its phosphorylation level28,29,30. Thus, it may be more beneficial to use phospho-specific antibodies to supplement other biochemical methods.
As mentioned earlier, there are other classic methods used to directly measure KCC2 activity. The assessment of KCC2 through measuring radioactive 86Rb+ flux through the membrane of homogenous cell preparations is a popular approach. This method uses active radioisotopes as tracers by passing them through ionic channels. Briefly, the cells of interest are incubated in cation free solutions to inhibit endogenous KCC2, followed by incubation with specific inhibitors such as ouabain, and then with uptake medium containing the inhibitor and 86Rb+. Liquid scintillation counters are used to measure/trace activities sequel to cell lysis. Though, this method is robust, highly sensitive and selective and is less prone to disturbances. However, its applications do not extend to tissues with multiple cell types like brain or neuron cultures. Moreover, this technique restricts changes in the resolution of ion concentration at the subcellular level. Furthermore, there are safety issues regarding the potential toxicity and health hazard of working with short half-life (18.65 days) radioisotopes characterized with high energy emission (max 1.77 MeV; max 1.08 MeV)31. This could massively suggest an unsuitability for neuronal cells studies where high number of cells are usually required. These issues lead to the development of the non-radioactive 85Rb+ efflux assay by Terstappen 1999, as an alternative to the radioactive 86Rb+ for determination of ion fluxes. The non-radioactive approach has greatly exiled the radioactive 86Rb+ assays for the analysis of K+ and non-selective cation channels in the pharmaceutical industry31. Non-radioactive 85Rb+ efflux assay involves two major processes, the first is cell culture and manipulation and the second is the determination of the tracer rubidium by atomic absorption spectroscopy (AAS). This method is easy to use, though, it does require a number of assay validation experiments and suffer from poor temporal resolution32. Nevertheless, non-radioactive 85Rb+ efflux assay has progressively proved to be a reliable technique for the assessment of KCCs and NKCCs33.
The thallium (TI+) flux assay uses TI+ as a surrogate ion for K+ due to its high binding affinity to the K+ site on KCC2 and NKCC2. TI+ influx into cells could be detected using a thallium-sensitive fluorescent dye such as benzothiazole coumarin and fluozin-2. Once transported by the channel, TI+ may associate with the BTC/fluozin-2 dye causing a fluorescent change that can be detected by fluorometric imaging plate reader31. TI+ indicator dyes enter cells as acetoxymethyl esters which are then cleaved by cytoplasmic esterases to release the active fluorogenic forms. To activate the KCCs, the cells are stimulated with a mixture of K+ and Tl+ in the presence or absence of test compounds (e.g., KCC2 inhibitors). Thallium enters and binds to the fluorescence dye. The increase in fluorescent signal is proportional to the influx of Tl+ into the cell specifically through the cotransporter, and therefore represents a functional measurement of the cotransporter activity. This method has also been well applied in measuring KCC2 and NKCC2 activity in various types of cell cultures, for examples, studies on HEK293 cell line stably expressing human KCC234. On a demerit end, there is a variety of potential off-target pathways lines that could interfere with TI+ influx, for example, Na+/K+ ATPase in HEK293 cells could cause a higher false positive or false negative hit rate35. Moreover, as with other flux assays, the implementation of such approach in neuronal cells remain limited due to the poor survival of neuronal cells after multiple washing steps. The neuronal expression of multiple K+ channels and transporter can also impede the accurate assessment of KCC2 specific K+ fluxes. This technique present limitations for study of channels in small neuronal compartment such as dendrites and dendritic spines, and the axons owed to lack of spatial resolution coupled with low temporal resolution.
Further techniques such as patch-clamp-electrophysiology are used to measure GABA activity; hence, indirectly reflecting activated and/or inactivated KCC2 as informed by the assessment of intracellular chloride ion homeostasis. Generally, electrophysiological measurements of SLC12 function rely on the principle that the GABAA receptors (GABAAR) are permeable to chloride36. KCC2 is key in the modulation of GABAergic inhibition. Particularly, the [Cl-]i extrusion activity of KCC2 underlies the hyperpolarization of GABAAR6. Intracellular recordings provide crucial insights through the extrapolation of chloride extruding capacity of KCC2 from the reversal in the potential of GABAAR-mediated currents (EGABA). A hyperpolarized EGABA indicates lower [Cl-]i and thus an increase in the activity of KCC2. Gramicidin patch-clamp technique in electrophysiology is a gold standard approach for measuring GABA activity. Some previously published studies have employed gramicidin patch-clamp recording to investigate the functions and activities of KCC2 to assess/monitor [Cl-]i homeostasis have indeed proven successful8,9,37,38,39,40. During a gramicidin patch-clamp recording, a tight seal on the cell/tissue surface is created using a glass electrode with a relative patch to record the intracellular activity of ion channels in reference to another electrode in a bath surrounding the cell/tissue. This technique can be performed by measuring the amount of current that crosses a cell&#39;s membrane at a &#64257;xed voltage in the voltage-clamp mode or by recording the amount of voltage moving across the membrane at a &#64257;xed current in the current clamp mode36. Several variations of the basic technique can be applied which largely depends on the research question. The technique does not create a relatively large pore-like whole-cell patch recording but the pore-forming antibiotic (gramicidin) that is contained in the electrode solution is used to form small pores in the membrane36. Particularly, the addition of gramicidin creates cation-selective pores in the membrane, which exhibit insignificant anion permeability. Voltage ramp protocols are an effective and reliable alternative to recording the current at a steady voltage. The current/voltage relations obtained with voltage ramp protocols seem to give a better recording of GABAAR-mediated membrane currents. In this protocol, a constantly changing but monitored voltage (at a steady rate) is applied and the current is constantly measured simultaneously36,41. During this protocol, the application of voltage pulses (usually in hyperpolarizing direction) is used to activate the leak current as a result of ohmic responses. Typically, the GABAAR-mediated membrane currents are calculated from the leak current (i.e., the reversal potentials of the leak-subtracted agonist currents)36. The current-voltage associations obtained from this protocol help to provide a better understanding of where the changes are occurring in ion concentrations during an experimental scenario involving GABAA receptor channels. Yelhekar et al.41 used a computational model to show that conclusions on stable ion concentrations from the interpolation method may not be justifiable because the estimated reversal potential from the method may be incorrect.
The average resistance used for most recordings is 5 M&#937;. Pipettes with lower resistance of 3-4 M&#937; may result in lower series resistance which is preferable for voltage-clamp recordings. However, the pipette&#39;s tip will be comparably wider for higher resistance pipettes and, as a consequence, it poses a challenge in the form of difficulty in seal formation and stability36,42. Hence, it is necessary to monitor the G&#937; formation to obtain recordings with a considerable reduction in the level of generated noisy data. The robustness of this technique to study the function and activities of KCC2 as adjudged by its suitability and reliability in the measurement of GABA activity has been confirmed by several studies. Previous studies have shown that [Cl-]i remain stable using this technique by measuring the responses of GABAARs (which are capable to gate chloride conductance) to their respective agonists. By implication, continuous electrical access comes with little or no modification of intracellular chloride concentration43,44. Furthermore, this technique facilitates circumvention of artificial changes in membrane potential and EGABA during GABAAR activation (which opens chloride and bicarbonate conductance)45. The aforementioned provides this technique an edge ahead of other types of electrophysiology recordings. However, the limitations of this technique include the following: (1) frequent recording noise may occur due to the tip of the electrode occupying part of the membrane which may reduce the current resolution, and (2) perforation of the membrane with gramicidin usually takes a relatively longer amount of time.

Potassium chloride cotransporters 2 (KCC2) is a member of the solute carrier family 12 (SLC12) of cation-chloride-cotransporters (CCCs), found exclusively in the neuron and is essential for the proper functioning of Cl- homeostasis and consequently functional GABAergic inhibition1,2,3,4. The maintenance of low intraneuronal Cl- concentration ([Cl-]i) at 4-6 mM by KCC2 facilitates &#947;-aminobutyric acid (GABA)/glycine hyperpolarization and synaptic inhibition in the brain and spinal cord5. Failure in the proper regulation of KCC2 has been associated with the prevalence of several neurological diseases, including epilepsy4. Furthermore, decreased KCC2-mediated Cl&#8722; extrusion and impaired hyperpolarizing GABAA and/or glycine receptor-mediated currents have been implicated in epilepsy, neuropathic pain, and spasticity6,7. Neuronal KCC2 is negatively modulated via phosphorylation of key regulatory residues within its C-terminal intracellular domain by the with-no-lysine (WNK)-STE20/SPS1-related proline/alanine-rich (SPAK)/Oxidative stress-responsive (OSR) kinase signaling complex1, which facilitates the maintenance of depolarized GABA activity in immature neurons2,8,9. The WNK-SPAK/OSR1 phosphorylates threonine residues 906 and 1007 (Thr906/Thr1007) and subsequently downregulates mRNA gene expression of KCC2, leading to a consequent deterioration in its physiological function8,10. More importantly, however, it is already a fact that the WNK-SPAK/OSR1 kinase complex is known to phosphorylate and inhibit KCC2 expression1,2,4,11,12, and that the inhibition of the kinase complex signaling pathways to phosphorylate Thr906/Thr1007 has been linked with the increased expression of the KCC2 mRNA gene13,14,15. It is important to note that the regulation of neuronal KCC2 and Na+-K+-2Cl- cotransporters 1 (NKCC1) expression via protein phosphorylation works concomitantly and in converse patterns1,4,16.
There has been consistent and considerable progress with regard to the understanding of mechanisms involved in the regulation of KCC2, accredited to the development of techniques that enables researchers to study its functions and activities; either via direct (assessing kinase regulatory sites phosphorylation) or indirect (observing and monitoring GABA activity) investigations. The protocol presented here highlights the application of western blotting techniques to study the functions and activities of neuronal K+-Cl- co-transporter KCC2 by investigating the phosphorylation of the cotransporter at kinase regulatory sites Thr906/1007.
Western blot is a method used to detect specific proteins of interest from a sample of tissue or cell. This method first separates the proteins by size through electrophoresis. The proteins are then electrophoretically transferred to a solid support (usually a membrane) before the target protein is marked using a specific antibody. The antibodies are conjugated to different tags or fluorophore-conjugated antibodies that are detected using either colorimetric, chemiluminescence, or fluorescence methods. This allows for a specific target protein to be detected from a mixture of proteins. This technique has been used to characterize phosphospecific sites of KCCs1 and has been used to identify kinase inhibitors that inhibit KCC3 Thr991/Thr1048 phosphorylation17.By following this protocol, one can specifically detect total and phosphorylated KCC2 from cell/tissue lysates. In principle, the detection of protein-conjugated antibodies by this technique is highly instrumental as it helps to improve the understanding of cooperative activities at the phospho-sites of KCC2, which sheds light on the molecular mechanisms involved in their physiological regulations. The quantitative analysis of the total protein expression is representative of the function and activity of KCC2. There are other classical methods used to directly measure KCC2 activity, such as rubidium ion and thallium ion uptake assay. Further techniques such as patch-clamp-electrophysiology are used to measure GABA activity; hence, indirectly reflecting activated and/or inactivated KCC2 as informed by the assessment of intracellular chloride ion homeostasis.

<table><tbody><tr><td>40% acrylamide</td><td>Sigma-Aldrich</td><td>A2917</td><td>Used to make seperating and stacking gel for SDS-PAGE&amp;nbsp;</td></tr><tr><td>Ammonium Per Sulfate</td><td>Sigma-Aldrich</td><td>248614</td><td>Used to make seperating and stacking gel for SDS-PAGE&amp;nbsp;</td></tr><tr><td>anti pSPAK</td><td>Dundee University</td><td>S670B</td><td>Used as primary antibody for western blotting</td></tr><tr><td>anti-KCC2</td><td>Dundee University</td><td>S700C</td><td>Used as primary antibody for western blotting</td></tr><tr><td>anti-KCC2 pSer940</td><td>Thermo Fisher Scientific</td><td>PA5-95678</td><td>Used as primary antibody for western blotting</td></tr><tr><td>anti-KCC2 pThr1007</td><td>Dundee University</td><td>S961C</td><td>Used as primary antibody for western blotting</td></tr><tr><td>anti-KCC2 pThr906</td><td>Dundee University</td><td>S959C</td><td>Used as primary antibody for western blotting</td></tr><tr><td>anti-mouse</td><td>Cell Signalling technology</td><td>66002</td><td>Used as secondary antibody for western blotting</td></tr><tr><td>anti-NKCC1</td><td>Dundee University</td><td>S841B</td><td>Used as primary antibody for western blotting</td></tr><tr><td>anti-NKCC1 pThr203/207/212</td><td>Dundee University</td><td>S763B</td><td>Used as primary antibody for western blotting</td></tr><tr><td>anti-rabbit</td><td>Cell Signalling technology</td><td>C29F4</td><td>Used as secondary antibody for western blotting</td></tr><tr><td>anti-sheep</td><td>abcam</td><td>ab6900</td><td>Used as secondary antibody for western blotting</td></tr><tr><td>anti-SPAK</td><td>Dundee University</td><td>S669D</td><td>Used as primary antibody for western blotting</td></tr><tr><td>anti-&amp;beta;-Tubulin III</td><td>Sigma-Aldrich</td><td>T8578</td><td>Used as primary antibody for western blotting</td></tr><tr><td>Benzamine</td><td>Merck UK</td><td>135828</td><td>Used as component of lysis buffer</td></tr><tr><td>Beta-mercaptoethanol</td><td>Sigma-Aldrich</td><td>M3148</td><td>Used as component of loading buffer and lysis buffer</td></tr><tr><td>Bradford Coomasie</td><td>Thermo Scientific</td><td>1856209</td><td>Used for lysate protein quantification</td></tr><tr><td>Casting apparatus</td><td>Atto&amp;nbsp;</td><td>WSE-1165W</td><td>Used to run SDS-page electrophoresis</td></tr><tr><td>Centrifuge</td><td>Eppendorf</td><td>5804</td><td>Used in lysate preparation</td></tr><tr><td>Centrifuge</td><td>VWR</td><td>MicroStar 17R</td><td>Used for spinning samples</td></tr><tr><td>Dimethyl sulfoxide (DMSO)</td><td>Sigma-Aldrich</td><td>D2650-100ML</td><td>Used for cell culture experiment</td></tr><tr><td>Dried Skimmed Milk</td><td>Marvel</td><td>N/A</td><td>Used to make blocking buffer</td></tr><tr><td>Dulbecco&#039;s Modified Eagle&#039;s Medium - high glucose</td><td>Sigma-Aldrich</td><td>D6429</td><td>Used for cell culture</td></tr><tr><td>ECL reagent</td><td>Perkin Elmer</td><td>ORTT755/2655</td><td>Used to develop image for western blotting</td></tr><tr><td>EDTA</td><td>Fisher Scientific</td><td>D/0700/53</td><td>Used as component of lysis buffer</td></tr><tr><td>EGTA</td><td>Sigma-Aldrich</td><td>e4378</td><td>Used as component of lysis buffer</td></tr><tr><td>Electrophoresis Power Supply</td><td>BioRad</td><td>PowerPAC HC</td><td>To supply power to run SDS-page electrophoresis</td></tr><tr><td>Ethanol</td><td>ThermoFisher</td><td>E/0650DF/17</td><td>Used for preparing sterilized equipments and environment</td></tr><tr><td>Fetal Bovine Serum -&amp;nbsp; heat inactivated</td><td>Merck Life Sciences UK</td><td>F9665</td><td>Used for cell culture</td></tr><tr><td>Fumehood</td><td>Walker</td><td>A7277</td><td>Used for cell culture</td></tr><tr><td>Gel Blotting - Whatman</td><td>GE Healthcare&amp;nbsp;</td><td>10426981</td><td>Used in western blotting to make transfer sandwich</td></tr><tr><td>Glycine</td><td>Sigma-Aldrich</td><td>15527</td><td>Used to make buffers</td></tr><tr><td>GraphPad Prism Software</td><td>GraphPad Software, Inc., USA</td><td>Version 6.0</td><td>Used for plotting graphs and analysing data for&amp;nbsp; western blotting</td></tr><tr><td>HCl</td><td>Acros Organics</td><td>10647282</td><td>Used to make seperating and stacking gel for SDS-PAGE&amp;nbsp;</td></tr><tr><td>Heating block</td><td>Grant</td><td>QBT1</td><td>Used to heat WB loading samples</td></tr><tr><td>HEK293 cells</td><td>Merck UK</td><td>12022001-1VL</td><td>Cell line for culture experiment</td></tr><tr><td>ImageJ Software</td><td>Wayne Rasband and Contributors; NIH, USA&amp;nbsp;</td><td>ImageJ 1.53e</td><td>Used to measure band intensities from western blotting images</td></tr><tr><td>Imaging system</td><td>BioRad</td><td>ChemiDoc MP</td><td>Used to take western blotting images</td></tr><tr><td>Incubator</td><td>LEEC</td><td>LEEC precision 190D</td><td>Used for cell culture</td></tr><tr><td>Isopropanol</td><td>Honeywell</td><td>24137</td><td>Used in casting gel for electrophoresis</td></tr><tr><td>L-glutamine solution</td><td>Sigma-Aldrich</td><td>G7513</td><td>Used for cell culture</td></tr><tr><td>Lithium dodecyl sulfate (LDS)</td><td>Novex</td><td>NP0008</td><td>Used as loading buffer for western blotting</td></tr><tr><td>MEM Non-essential amino acid&amp;nbsp;</td><td>Merck Life Sciences UK</td><td>M7145</td><td>Used for cell culture</td></tr><tr><td>Microcentrifuge</td><td>Eppendorf</td><td>5418</td><td>Used for preparing lysates for WB</td></tr><tr><td>Microplate reader</td><td>BioRad</td><td>iMark</td><td>Used for lysate protein concentration readout</td></tr><tr><td>Microsoft Powerpoint</td><td>Microsoft, USA</td><td>PowerPoint2016</td><td>Used to edit western blotting images</td></tr><tr><td>Molecular Weight Marker</td><td>BioRad</td><td>1610373</td><td>Used for western blotting</td></tr><tr><td>N-ethylmaleimide</td><td>Thermo Fisher Scientific</td><td>23030</td><td>Used for cell culture experiment</td></tr><tr><td>Nitrocellulose membrane</td><td>Fisher Scientific</td><td>45004091</td><td>Used for western blotting</td></tr><tr><td>Penicillin-Streptomycin</td><td>Gibco</td><td>15140122</td><td>Used for cell culture</td></tr><tr><td>pH Meter</td><td>Mettler Toledo</td><td>Seven compact s210</td><td>Used to monitor pH of buffer solutions</td></tr><tr><td>Phenylmethylsulfonylfluoride (PMSF)</td><td>Sigma-Aldrich</td><td>P7626</td><td>Used as component of lysis buffer</td></tr><tr><td>Phosphate Buffer Saline</td><td>Sigma-Aldrich</td><td>D8537</td><td>Used for cell culture</td></tr><tr><td>PKC&amp;delta; pThr505</td><td>Cell Signalling technology</td><td>9374</td><td>Used as primary antibody for western blotting</td></tr><tr><td>Sepharose Protein G</td><td>Generon</td><td>PG50-00-0002</td><td>Used for immunoprecipitation</td></tr><tr><td>Sodium chloride</td><td>Sigma-Aldrich</td><td>S7653</td><td>Used as component of wash buffer</td></tr><tr><td>Sodium Chloride</td><td>Sigma-Aldrich</td><td>S7653</td><td>Used to prepare TBS-T buffer</td></tr><tr><td>Sodium Dodecyl Sulfate</td><td>Sigma-Aldrich</td><td>L5750</td><td>Used to make seperating and stacking gel for SDS-PAGE&amp;nbsp;</td></tr><tr><td>sodium orthovanadate</td><td>Sigma-Aldrich</td><td>S6508</td><td>Used as component of lysis buffer</td></tr><tr><td>Sodium Pyruvate</td><td>Sigma-Aldrich</td><td>S8636</td><td>Used for cell culture</td></tr><tr><td>sodium-&amp;beta;-glycerophosphate</td><td>Merck UK</td><td>G9422</td><td>Used as component of lysis buffer</td></tr><tr><td>Staurosporine (from &lt;em&gt;Streptomyces sp.&lt;/em&gt;)</td><td>Scientific Laboratory Supplies, UK</td><td>S4400-1MG</td><td>Used for cell culture experiment</td></tr><tr><td>Sucrose</td><td>Scientifc Laboratory Supplies</td><td>S0389</td><td>Used as component of lysis buffer</td></tr><tr><td>TEMED</td><td>Sigma-Aldrich</td><td>T7024</td><td>Used to make seperating and stacking gel for SDS-PAGE&amp;nbsp;</td></tr><tr><td>Transfer Chamber</td><td>BioRad</td><td>1658005EDU</td><td>Used in western blotting to transfer protein on membrane</td></tr><tr><td>Tris</td><td>Sigma-Aldrich</td><td>T6066</td><td>Used to make seperating and stacking gel for SDS-PAGE&amp;nbsp;</td></tr><tr><td>Triton-X100</td><td>Sigma-Aldrich</td><td>T8787</td><td>Used as component of lysis buffer</td></tr><tr><td>Trypsin-EDTA Solution</td><td>Merck Life Sciences UK</td><td>T4049</td><td>Used for cell culture</td></tr><tr><td>Tween-20</td><td>Sigma-Aldrich</td><td>P3179</td><td>Used as make TBS-T buffer</td></tr><tr><td>Vacuum pump</td><td>Charles Austen</td><td>Dymax 5</td><td>Used for cell culture</td></tr><tr><td>Vortex</td><td>Scientific Industries</td><td>K-550-GE</td><td>Used in sample preparation</td></tr><tr><td>Vortex mixer</td><td>Scientific Industries Ltd</td><td>Vortex-Genie&amp;nbsp; K-550-GE</td><td>Used of mixing resolved sample</td></tr><tr><td>Water bath</td><td>Grant Instruments Ltd. (JB Academy)</td><td>JBA5</td><td>Used to incubate solutions</td></tr></tbody></table>

study of the functions and activities of neuronal k-cl co-transporter kcc2 using western blotting

Potassium chloride cotransporters 2 (KCC2) is a member of the solute carrier family 12 (SLC12) of cation-chloride-cotransporters (CCCs), found exclusively in the neuron and is essential for the proper functioning of Cl- homeostasis and consequently functional GABAergic inhibition. Failure in proper regulation of KCC2 is deleterious and has been associated with the prevalence of several neurological diseases, including epilepsy. There has been considerable progress with regard to understanding the mechanisms involved in the regulation of KCC2, accredited to the development of techniques that enable researchers to study its functions and activities; either via direct (assessing kinase regulatory sites phosphorylation) or indirect (observing and monitoring GABA activity) investigations. Here, the protocol highlights how to investigate KCC2 phosphorylation at kinase regulatory sites - Thr906 and Thr1007- using western blotting technique. There are other classic methods used to directly measure KCC2 activity, such as rubidium ion and thallium ion uptake assay. Further techniques such as patch-clamp-electrophysiology are used to measure GABA activity; hence, indirectly reflecting activated and/or inactivated KCC2 as informed by the assessment of intracellular chloride ion homeostasis. A few of these additional techniques will be briefly discussed in this manuscript.

Here, the representative result presented in Figure 1 investigated the impact of staurosporine and NEM on WNK-SPAK/OSR1 mediated phosphorylation of KCC2 and NKCC1 in HEK293 cell lines stably expressing KCC2b (HEKrnKCC2b)18 using the western blotting technique. Comprehensive details on the representative results are discussed in Zhang et al.15. Similar to NEM, staurosporine is a broad kinase inhibitor that can enhance KCC2 transport activity and inhibit NKCC1 activity15,20. The treatment of HEK293 cells with staurosporine and NEM caused decreased phosphorylation at SPAK target sites - Thr233 situated in the T-loop kinase domain and the S-loop phosphorylation site Ser373 of hsSPAK. Thus, both compounds abridged the phosphorylation levels of the aforementioned SPAK phospho-sites. Also, staurosporine reduced the phosphorylation of Ser940 in HEKrnKCC2b, but NEM significantly increased its phosphorylation. Furthermore, staurosporine decreases phosphorylation at the Thr505 site, whereas NEM caused a slight, but insignificant increase in phosphorylation at the same site. The differential effects of both compounds on the phosphorylation of protein kinase C (PKC) at the Thr505 site, and KCC2b at the Ser940 site correlate well. The representative result also showed that both agents altered the expression of total rnKCC2b, hsNKCC1, or hsSPAK. NEM (but not staurosporine treatment) caused a significant increase in the expression of the total KCC2 amount, whereas the expression of total NKCC1 and SPAK were not significantly changed when treated with both compounds. Furthermore, the two compounds caused a decreased phosphorylation of SPAK at Thr233 and Ser373 sites, and this correlated with the abridged phosphorylation of Thr906/Thr1007 and Thr203/207/212 sites in rnKCC2b and hsNKCC1, respectively. Additionally, staurosporine and NEM reduced and increased the phosphorylation of PKC at the Ser940 site in rnKCC2b, respectively, which correlated with the reduction and increment in the phosphorylation of PKC-&#948; at the Thr505 site upon staurosporine and NEM treatment, respectively (Figure 1).
<img alt="Figure 1" class="xfigimg" src="/files/ftp_upload/64179/64179fig01.jpg" /> 
Figure 1: Quantitative analyses of rnKCC2b and hsNKCC1 phospho-sites upon staurosporine and NEM treatment in HEKrnKCC2b cells. (A) Stably transfected HEKrnKCC2b cells were treated with DMSO (control), 8 &#181;M staurosporine, or 0.5 mM NEM for 15 min. Cell lysates were harvested and subjected to immunoprecipitation (IP) and immunoblot (IB) with indicated antibodies. Abbreviations: D = dimeric KCC2; M = monomeric KCC2. (B) Immunoblot quantification of stably transfected HEKrnKCC2b cells. Band intensities were quantified with ImageJ software. ***p &#60; 0.001; **p &#60; 0.01; Wilcoxon-Mann Whitney test (n = 6). This figure has been modified from Zhang et al.15. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/64179/64179fig01large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td colspan="2">&#160;&#160;&#160;&#160;&#160;&#160;&#160; 8 mL of 8% Separating Gel</td>
			<td colspan="2">5 mL of 6% Stacking Gel</td>
		</tr>
		<tr>
			<td>Materials needed</td>
			<td>Volume (&#181;L)</td>
			<td>Materials needed</td>
			<td>Volume (&#181;L)</td>
		</tr>
		<tr>
			<td>Distilled H2O</td>
			<td>4200&#160;&#160;</td>
			<td>Distilled H2O</td>
			<td>2900</td>
		</tr>
		<tr>
			<td>40% Acrylamide</td>
			<td>1600</td>
			<td>40% Acrylamide</td>
			<td>750</td>
		</tr>
		<tr>
			<td>1.5 M Tris pH 8.8</td>
			<td>2000&#160;</td>
			<td>0.5 M Tris pH 6.8</td>
			<td>1250</td>
		</tr>
		<tr>
			<td>10% SDS</td>
			<td>80&#160;&#160;</td>
			<td>10% SDS</td>
			<td>50</td>
		</tr>
		<tr>
			<td>10% APS</td>
			<td>80&#160;&#160;</td>
			<td>10% APS</td>
			<td>50</td>
		</tr>
		<tr>
			<td>TEMED</td>
			<td>8&#160;&#160;</td>
			<td>TEMED</td>
			<td>5</td>
		</tr>
	</tbody>
</table>
<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td></td>
			<td>Making the separating gel:</td>
		</tr>
		<tr>
			<td>1)</td>
			<td>Begin with 4.2 mL of ddH2O</td>
		</tr>
		<tr>
			<td>2)</td>
			<td>Add 1.6 mL of 40% acrylamide/bis-acrylamide solution</td>
		</tr>
		<tr>
			<td>3)</td>
			<td>Add 2 mL of 1.5 M Tris pH 8.8 and mix</td>
		</tr>
		<tr>
			<td>4)</td>
			<td>Mix in 80 &#181;L of 10% SDS</td>
		</tr>
		<tr>
			<td>5)</td>
			<td>When ready to use, add 8 &#181;L of TEMED and mix</td>
		</tr>
		<tr>
			<td>6)</td>
			<td>Add 80 &#181;L of 10% APS* and mix</td>
		</tr>
		<tr>
			<td></td>
			<td>Making the stacking gel:</td>
		</tr>
		<tr>
			<td>1)</td>
			<td>Begin with 2.9 mL of ddH2O</td>
		</tr>
		<tr>
			<td>2)</td>
			<td>Add 0.75 mL of 40% acrylamide/bis-acrylamide solution</td>
		</tr>
		<tr>
			<td>3)</td>
			<td>Add 1.25 mL of 0.5 M Tris pH 6.8 and mix</td>
		</tr>
		<tr>
			<td>4)</td>
			<td>Mix in 50 &#181;L of 10% SDS</td>
		</tr>
		<tr>
			<td>5)</td>
			<td>When ready to use, add 5 &#181;L of TEMED and mix</td>
		</tr>
		<tr>
			<td>6)</td>
			<td>Add 50 &#181;L of 10% APS* and mix</td>
		</tr>
		<tr>
			<td colspan="2">SDS = Sodium Dodecyl Sulfate</td>
		</tr>
		<tr>
			<td colspan="2">APS = Ammonium Per Sulfate</td>
		</tr>
		<tr>
			<td colspan="2">TEMED = N, N, N&#697;, N&#697;-tetramethylethylenediamine</td>
		</tr>
		<tr>
			<td colspan="2">*Upon addition of APS, the solution should be immediately poured into the casting apparatus because the solution polymerizes within few minutes. Hence, it is advisable to prepare the separating and stacking gel solutions just about when the solutions are needed.</td>
		</tr>
	</tbody>
</table>
Table 1: Recipe for making polyacrylamide gel mix (separating and stacking gel solutions).
<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>Gel Percentage (%)</td>
			<td>Protein Size (kDa)</td>
		</tr>
		<tr>
			<td>Up to 20</td>
			<td>4 to 40</td>
		</tr>
		<tr>
			<td>15</td>
			<td>12 to 45</td>
		</tr>
		<tr>
			<td>12.5</td>
			<td>10 to 70</td>
		</tr>
		<tr>
			<td>10</td>
			<td>15 to 100</td>
		</tr>
		<tr>
			<td>8</td>
			<td>50 to 200</td>
		</tr>
		<tr>
			<td>4 to 6</td>
			<td>&#62; 200</td>
		</tr>
	</tbody>
</table>
Table 2: Recommended SDS-PAGE gel percentage for different sizes of proteins

Watch this Scientific Journal Video about Study of the Functions and Activities of Neuronal K-Cl Co-Transporter KCC2 Using Western Blotting at JoVE.com

Study of the Functions and Activities of Neuronal K-Cl Co-Transporter KCC2 Using Western Blotting

The present protocol highlights the application of western blotting technique to study the functions and activities of neuronal K-Cl co-transporter KCC2. The protocol describes the investigation of KCC2 phosphorylation at kinase regulatory sites Thr906/1007 via western blotting. Also, additional methods to confirm KCC2 activity are briefly highlighted in this text.

Potassium chloride cotransporters 2 (KCC2) is a member of the solute carrier family 12 (SLC12) of cation-chloride-cotransporters (CCCs), found exclusively ...

study-functions-activities-neuronal-k-cl-co-transporter-kcc2-using

Nanyang Technological University

Research

JoVE Journal

Biochemistry

2.1K Views.  University of Exeter, Hatherly Laboratories. Dit protocol kan helpen om de mechanismen te begrijpen die betrokken zijn bij KCC2-regulatie door de fosforylering van kinasemoleculaire grootte direct te beoordelen, waardoor licht wordt geworpen op de fysiologische functies en activiteiten. Het kan worden gebruikt om moleculen zoals interessante eiwitten uit complexe mengsels van verwante moleculen te identificeren en te karakteriseren, zelfs als een eiwitexpressie erg klein is. De techniek is een essentieel hulpmiddel voor eiwitanalyse van...

Video: Study of the Functions and Activities of Neuronal K-Cl Co-Transporter KCC2 Using Western Blotting

Identification of Novel CK2 Kinase Substrates Using a Versatile Biochemical Approach

The study of kinase-substrate relationships is essential to gain a complete understanding of the functions of these enzymes and their downstream targets in both physiological and pathological states. CK2 is an evolutionarily conserved serine/threonine kinase with a growing list of hundreds of substrates involved in multiple cellular processes. Due to its pleiotropic properties, identifying and characterizing a comprehensive set of CK2 substrates has been particularly challenging and remains a hurdle in the study of this important enzyme. To address this challenge, we have devised a versatile experimental strategy that enables the targeted enrichment and identification of putative CK2 substrates. This protocol takes advantage of the unique dual co-substrate specificity of CK2 allowing for specific thiophosphorylation of its substrates in a cell or tissue lysate. These substrate proteins are subsequently alkylated, immunoprecipitated, and identified by liquid chromatography/tandem mass spectrometry (LC-MS/MS). We have previously used this approach to successfully identify CK2 substrates from Drosophila ovaries and here we extend the application of this protocol to human glioblastoma cells, illustrating the adaptability of this method to investigate the biological roles of this kinase in various model organisms and experimental systems.

The objective of this protocol is to label, enrich, and identify substrates of protein kinase CK2 from a complex biological sample such as a cell lysate or tissue homogenate. This method leverages unique aspects of CK2 biology for this purpose.

The study of kinase-substrate relationships is essential to gain a complete understanding of the functions of these enzymes and their downstream targets ...

Characterization at the Molecular Level using Robust Biochemical Approaches of a New Kinase Protein

Extensive whole genome sequencing has identified many Open Reading Frames (ORFs) providing many potential proteins. These proteins may have important roles for the cell and may unravel new cellular processes. Among proteins, kinases are major actors as they belong to cell signaling pathways and have the ability to switch on or off many processes crucial to the fate of the cell, such as cell growth, division, differentiation, motility, and death.
In this study, we focused on a new potential kinase protein, LIMK2-1. We demonstrated its existence by Western Blot using a specific antibody. We evaluated its interaction with an upstream regulating protein using coimmunoprecipitation experiments. Coimmunoprecipitation is a very powerful technique able to detect the interaction between two target proteins. It may also be used to detect new partners of a bait protein. The bait protein may be purified either via a tag engineered to its sequence or via an antibody specifically targeting it. These protein complexes may then be separated by SDS-PAGE (Sodium Dodecyl Sulfate PolyAcrylamide Gel) and identified using mass spectrometry. Immunoprecipitated LIMK2-1 was also used to test its kinase activity in vitro by &#947;[32P] ATP labeling. This well-established assay may use many different substrates, and mutated versions of the bait may be used to assess the role of specific residues. The effects of pharmacological agents may also be evaluated since this technique is both highly sensitive and quantitative. Nonetheless, radioactivity handling requires particular caution. Kinase activity may also be assessed with specific antibodies targeting the phospho group of the modified amino acid. These kinds of antibodies are not commercially available for all the phospho modified residues.

We characterized a new kinase protein using robust biochemical approaches: Western Blot analysis with a dedicated specific antibody on different cell lines and tissues, interactions by coimmunoprecipitation experiments, kinase activity detected by Western Blot using a phospho-specific antibody and by &#947;[32P] ATP labeling.

Extensive whole genome sequencing has identified many Open Reading Frames (ORFs) providing many potential proteins. These proteins may have important ...

Non-Radioactive In Vitro Cardiac Myosin Light Chain Kinase Assays

Cardiac-specific myosin regulatory light chain kinase (cMLCK) regulates cardiac sarcomere structure and contractility by phosphorylating the ventricular isoform of the myosin regulatory light chain (MLC2v). MLC2v phosphorylation levels are significantly reduced in failing hearts, indicating the clinical importance of assessing the activity of cMLCK and the phosphorylation level of MLC2v to elucidate the pathogenesis of heart failure. This paper describes nonradioactive methods to assess both the activity of cMLCK and MLC2v phosphorylation levels. In vitro kinase reactions are performed using recombinant cMLCK with recombinant calmodulin and MLC2v in the presence of ATP and calcium at 25 &#176;C, which are followed by either a bioluminescent ADP detection assay or a phosphate-affinity SDS-PAGE. In the representative study, the bioluminescent ADP detection assay showed a strict linear increase of the signal at cMLCK concentrations between 1.25 nM to 25 nM. Phosphate-affinity SDS-PAGE also showed a linear increase of phosphorylated MLC2v in the same cMLCK concentration range. Next, the time-dependency of the reactions was examined at the concentration of 5 nM cMLCK. A bioluminescent ADP detection assay showed a linear increase in the signal during 90 min of the reaction. Similarly, phosphate-affinity SDS-PAGE showed a time-dependent increase of phosphorylated MLC2v. The biochemical parameters of cMLCK for MLC2v were determined by a Michaelis-Menten plot using the bioluminescent ADP detection assay. The Vmax was 1.65 &#177; 0.10 mol/min/mol kinase and the average Km was around 0.5 USA &#181;M at 25 &#176;C. Next, the activity of wild type and the dilated cardiomyopathy-associated p.Pro639Valfs*15 mutant cMLCK were measured. The bioluminescent ADP detection assay and phosphate-affinity SDS-PAGE correctly detected defects in cMLCK activity and MLC2v phosphorylation, respectively. In conclusion, a combination of the bioluminescent ADP detection assay and the phosphate-affinity SDS-PAGE is a simple, accurate, safe, low-cost, and flexible method to measure cMLCK activity and the phosphorylation level of MLC2v.

This study describes protocols for nonradiometric methods, a bioluminescent ADP detection assay and a phosphate-affinity SDS-PAGE, to determine the kinase activity of cardiac myosin light chain kinase (cMLCK) and the phosphorylation level of its substrate, myosin regulatory light chain (MLC2v).

Cardiac-specific myosin regulatory light chain kinase (cMLCK) regulates cardiac sarcomere structure and contractility by phosphorylating the ventricular ...

Mutagenesis and Functional Analysis of Ion Channels Heterologously Expressed in Mammalian Cells

We will demonstrate how to study the functional effects of introducing a point mutation in an ion channel. We study G protein-gated inwardly rectifying potassium (referred to as GIRK) channels, which are important for regulating the excitability of neurons. There are four different mammalian GIRK channel subunits (GIRK1-GIRK4) - we focus on GIRK2 because it forms a homotetramer. Stimulation of different types of G protein-coupled receptors (GPCRs), such as the muscarinic receptor (M2R), leads to activation of GIRK channels. Alcohol also directly activates GIRK channels. We will show how to mutate one amino acid by specifically changing one or more nucleotides in the cDNA for the GIRK channel. This mutated cDNA sequence will be amplified in bacteria, purified, and the presence of the point mutation will be confirmed by DNA sequencing. The cDNAs for the mutated and wild-type GIRK channels will be transfected into human embryonic kidney HEK293T cells cultured in vitro. Lastly, whole-cell patch-clamp electrophysiology will be used to study the macroscopic potassium currents through the ectopically expressed wild-type or mutated GIRK channels. In this experiment, we will examine the effect of a L257W mutation in GIRK2 channels on M2R-dependent and alcohol-dependent activation.

We will demonstrate how to study the effect of a single point mutation on the function of an ion channel.

We will demonstrate how to study the functional effects of introducing a point mutation in an ion channel. We study G protein-gated inwardly rectifying ...

Biology

Assay to Measure Nucleocytoplasmic Transport in Real Time within Motor Neuron-like NSC-34 Cells

Nucleocytoplasmic transport refers to the import and export of large molecules from the cell nucleus. Recently, a number of studies have shown a connection between amyotrophic lateral sclerosis (ALS) and impairments in the nucleocytoplasmic pathway. ALS is a neurodegenerative disease affecting the motor neurons and resulting in paralysis and ultimately in death, within 2-5 years on average. Most cases of ALS are sporadic, lacking any apparent genetic linkage, but 10% are inherited in a dominant manner. Recently, hexanucleotide repeat expansions (HREs) in the chromosome 9 open reading frame 72 (C9orf72) gene were identified as a genetic cause of ALS and frontotemporal dementia (FTD). Importantly, different groups have recently proposed that these mutants affect nucleocytoplasmic transport. These studies have mostly shown the final outcome and manifestations caused by HREs on nucleocytoplasmic transport, but they do not demonstrate nuclear transport dysfunction in real time. As a result, only severe nucleocytoplasmic transport deficiency can be determined, mostly due to high overexpression or exogenous protein insertion. 
This protocol describes a new and very sensitive assay to evaluate and quantify nucleocytoplasmic transport dysfunction in real time. The rate of import of a NLS-NES-GFP protein (shuttle-GFP) can be quantified in real time using fluorescent microscopy. This is performed by using an exportin inhibitor, thus allowing the shuttle GFP only to enter the nucleus. To validate the assay, the C9orf72 HRE translated dipeptide repeats, poly(GR) and poly(PR), which have been previously shown to disrupt nucleocytoplasmic transport, were used. Using the described assay, a 50% decrease in the nuclear import rate was observed compared to the control. Using this system, minute changes in nucleocytoplasmic transport can be examined and the ability of different factors to rescue (even partially) a nucleocytoplasmic transport defect can be determined.

This protocol describes a method to sensitively measure the nucleocytoplasmic transport rate within motor neuron-like NSC-34 cells by quantifying the real-time change in the nuclear import of a NLS-NES-GFP protein.

Nucleocytoplasmic transport refers to the import and export of large molecules from the cell nucleus. Recently, a number of studies have shown a ...

Neuroscience

Assaying the Kinase Activity of LRRK2 in vitro

Leucine Rich Repeat Kinase 2 (LRRK2) is a 2527 amino acid member of the ROCO family of proteins, possessing a complex, multidomain structure including a GTPase domain (termed ROC, for Ras of Complex proteins) and a kinase domain1. The discovery in 2004 of mutations in LRRK2 that cause Parkinson's disease (PD) resulted in LRRK2 being the focus of a huge volume of research into its normal function and how the protein goes awry in the disease state2,3. Initial investigations into the function of LRRK2 focused on its enzymatic activities4-6. Although a clear picture has yet to emerge of a consistent alteration in these due to mutations, data from a number of groups has highlighted the importance of the kinase activity of LRRK2 in cell death linked to mutations7,8. Recent publications have reported inhibitors targeting the kinase activity of LRRK2, providing a key experimental tool9-11. In light of these data, it is likely that the enzymatic properties of LRRK2 afford us an important window into the biology of this protein, although whether they are potential drug targets for Parkinson's is open to debate.
A number of different approaches have been used to assay the kinase activity of LRRK2. Initially, assays were carried out using epitope tagged protein overexpressed in mammalian cell lines and immunoprecipitated, with the assays carried out using this protein immobilised on agarose beads4,5,7. Subsequently, purified recombinant fragments of LRRK2 in solution have also been used, for example a GST tagged fragment purified from insect cells containing residues 970 to 2527 of LRRK212. Recently, Dani&euml;ls et al. reported the isolation of full length LRRK2 in solution from human embryonic kidney cells, however this protein is not widely available13. In contrast, the GST fusion truncated form of LRRK2 is commercially available (from Invitrogen, see table 1 for details), and provides a convenient tool for demonstrating an assay for LRRK2 kinase activity. Several different outputs for LRRK2 kinase activity have been reported. Autophosphorylation of LRRK2 itself, phosphorylation of Myelin Basic Protein (MBP) as a generic kinase substrate and phosphorylation of an artificial substrate - dubbed LRRKtide, based upon phosphorylation of threonine 558 in Moesin - have all been used, as have a series of putative physiological substrates including &alpha;-synuclein, Moesin and 4-EBP14-17. The status of these proteins as substrates for LRRK2 remains unclear, and as such the protocol described below will focus on using MBP as a generic substrate, noting the utility of this system to assay LRRK2 kinase activity directed against a range of potential substrates.

Assaying the Kinase Activity of LRRK2 in vitro

Leucine Rich Repeat Kinase 2 is a large multidomain kinase, mutations in which are the most common genetic cause of Parkinson's disease. Analysis of the kinase activity of this protein has proven to be a crucial tool in understanding the biology and dysfunction of this protein. In this paper, in vitro assaying of the kinase activity of LRRK2 and a selection of its mutants is described, providing an experimental system to examine phosphorylation of putative substrates and potential dysfunction of LRRK2 in disease.

Leucine Rich Repeat Kinase 2 (LRRK2) is a 2527 amino acid member of the ROCO family of proteins, possessing a complex, multidomain structure including a ...

Measuring Cation Transport by Na,K- and H,K-ATPase in Xenopus Oocytes by Atomic Absorption Spectrophotometry: An Alternative to Radioisotope Assays

Whereas cation transport by the electrogenic membrane transporter Na+,K+-ATPase can be measured by electrophysiology, the electroneutrally operating gastric H+,K+-ATPase is more difficult to investigate. Many transport assays utilize radioisotopes to achieve a sufficient signal-to-noise ratio, however, the necessary security measures impose severe restrictions regarding human exposure or assay design. Furthermore, ion transport across cell membranes is critically influenced by the membrane potential, which is not straightforwardly controlled in cell culture or in proteoliposome preparations. Here, we make use of the outstanding sensitivity of atomic absorption spectrophotometry (AAS) towards trace amounts of chemical elements to measure Rb+ or Li+ transport by Na+,K+- or gastric H+,K+-ATPase in single cells. Using Xenopus oocytes as expression system, we determine the amount of Rb+ (Li+) transported into the cells by measuring samples of single-oocyte homogenates in an AAS device equipped with a transversely heated graphite atomizer (THGA) furnace, which is loaded from an autosampler. Since the background of unspecific Rb+ uptake into control oocytes or during application of ATPase-specific inhibitors is very small, it is possible to implement complex kinetic assay schemes involving a large number of experimental conditions simultaneously, or to compare the transport capacity and kinetics of site-specifically mutated transporters with high precision. Furthermore, since cation uptake is determined on single cells, the flux experiments can be carried out in combination with two-electrode voltage-clamping (TEVC) to achieve accurate control of the membrane potential and current. This allowed e.g. to quantitatively determine the 3Na+/2K+ transport stoichiometry of the Na+,K+-ATPase and enabled for the first time to investigate the voltage dependence of cation transport by the electroneutrally operating gastric H+,K+-ATPase. In principle, the assay is not limited to K+-transporting membrane proteins, but it may work equally well to address the activity of heavy or transition metal transporters, or uptake of chemical elements by endocytotic processes.

Measuring Cation Transport by Na,K- and H,K-ATPase in Xenopus Oocytes by Atomic Absorption Spectrophotometry: An Alternative to Radioisotope Assays

We describe a method to quantify the activity of K+-countertransporting P-type ATPases by heterologous expression of the enzymes in Xenopus oocytes and measuring Rb+ or Li+ uptake into individual cells by atomic absorption spectrophotometry. The method is a sensitive and safe alternative to radioisotope flux experiments facilitating complex kinetic studies.

Whereas cation transport by the electrogenic membrane transporter Na+,K+-ATPase can be measured by electrophysiology, the electroneutrally operating ...

Metabolic Labeling of Leucine Rich Repeat Kinases 1 and 2 with Radioactive Phosphate

Leucine rich repeat kinases 1 and 2 (LRRK1 and LRRK2) are paralogs which share a similar domain organization, including a serine-threonine kinase domain, a Ras of complex proteins domain (ROC), a C-terminal of ROC domain (COR), and leucine-rich and ankyrin-like repeats at the N-terminus. The precise cellular roles of LRRK1 and LRRK2 have yet to be elucidated, however LRRK1 has been implicated in tyrosine kinase receptor signaling1,2, while LRRK2 is implicated in the pathogenesis of Parkinson's disease3,4. In this report, we present a protocol to label the LRRK1 and LRRK2 proteins in cells with 32P orthophosphate, thereby providing a means to measure the overall phosphorylation levels of these 2 proteins in cells. In brief, affinity tagged LRRK proteins are expressed in HEK293T cells which are exposed to medium containing 32P-orthophosphate. The 32P-orthophosphate is assimilated by the cells after only a few hours of incubation and all molecules in the cell containing phosphates are thereby radioactively labeled. Via the affinity tag (3xflag) the LRRK proteins are isolated from other cellular components by immunoprecipitation. Immunoprecipitates are then separated via SDS-PAGE, blotted to PVDF membranes and analysis of the incorporated phosphates is performed by autoradiography (32P signal) and western detection (protein signal) of the proteins on the blots. The protocol can readily be adapted to monitor phosphorylation of any other protein that can be expressed in cells and isolated by immunoprecipitation.

Leucine rich repeat kinases 1 and 2 (LRRK1 and LRRK2) are multidomain proteins which encode both GTPase and kinase domains and which are phosphorylated in cells. Here, we present a protocol to label LRRK1 and LRRK2 in cells with 32P orthophosphate, thereby providing a means to measure their overall cellular phophorylation levels.

Leucine rich repeat kinases 1 and 2 (LRRK1 and LRRK2) are paralogs which share a similar domain organization, including a serine-threonine kinase domain, ...

A Proteoliposome-Based Efflux Assay to Determine Single-molecule Properties of Cl- Channels and Transporters

The last 15 years have been characterized by an explosion in the ability to overexpress and purify membrane proteins from prokaryotic organisms as well as from eukaryotes. This increase has been largely driven by the successful push to obtain structural information on membrane proteins. However, the ability to functionally interrogate these proteins has not advanced at the same rate and is often limited to qualitative assays of limited quantitative value, thereby limiting the mechanistic insights that they can provide. An assay to quantitatively investigate the transport activity of reconstituted Cl- channels or transporters is described. The assay is based on the measure of the efflux rate of Cl- from proteoliposomes following the addition of the K+ ionophore valinomycin to shunt the membrane potential. An ion sensitive electrode is used to follow the time-course of ion efflux from proteoliposomes reconstituted with the desired protein. The method is highly suited for mechanistic studies, as it allows for the quantitative determination of key properties of the reconstituted protein, such as its unitary transport rate, the fraction of active protein and the molecular mass of the functional unit. The assay can also be utilized to determine the effect of small molecule compounds that directly inhibit/activate the reconstituted protein, as well as to test the modulatory effects of the membrane composition or lipid-modifying reagents. Where possible, direct comparison between results obtained using this method were found to be in good agreement with those obtained using electrophysiological approaches. The technique is illustrated using CLC-ec1, a CLC-type H+/Cl- exchanger, as a model system. The efflux assay can be utilized to study any Cl- conducting channel/transporter and, with minimal changes, can be adapted to study any ion-transporting protein.

A Proteoliposome-Based Efflux Assay to Determine Single-molecule Properties of Cl- Channels and Transporters

Proteoliposomes are used to study purified channels and transporters reconstituted in a well-defined biochemical environment. An experimental procedure to measure efflux mediated by these proteins is illustrated. The steps to prepare proteoliposomes, perform the recordings, and analyze data to quantitatively determine the functional properties of the reconstituted protein are described.

The last 15 years have been characterized by an explosion in the ability to overexpress and purify membrane proteins from prokaryotic organisms as well as ...

Functional Characterization of Na+/H+ Exchangers of Intracellular Compartments Using Proton-killing Selection to Express Them at the Plasma Membrane

Endosomal acidification is critical for a wide range of processes, such as protein recycling and degradation, receptor desensitization, and neurotransmitter loading in synaptic vesicles. This acidification is described to be mediated by proton ATPases, coupled to ClC chloride transporters. Highly-conserved electroneutral protons transporters, the Na+/H+ exchangers (NHE) 6, 7 and 9 are also expressed in these compartments. Mutations in their genes have been linked with human cognitive and neurodegenerative diseases. Paradoxically, their roles remain elusive, as their intracellular localization has prevented detailed functional characterization. This manuscript shows a method to solve this problem. This consists of the selection of mutant cell lines, capable of surviving acute cytosolic acidification by retaining intracellular NHEs at the plasma membrane. It then depicts two complementary protocols to measure the ion selectivity and activity of these exchangers: (i) one based on intracellular pH measurements using fluorescence video microscopy, and (ii) one based on the fast kinetics of lithium uptake. Such protocols can be extrapolated to measure other non-electrogenic transporters. Furthermore, the selection procedure presented here generates cells with an intracellular retention defective phenotype. Therefore these cells will also express other vesicular membrane proteins at the plasma membrane. The experimental strategy depicted here may therefore constitute a potentially powerful tool to study other intracellular proteins that will be then expressed at the plasma membrane together with the vesicular Na+/H+ exchangers used for the selection.

Functional Characterization of Na+/H+ Exchangers of Intracellular Compartments Using Proton-killing Selection to Express Them at the Plasma Membrane

The first part of this article shows how to select mutant cell lines expressing vesicular Na+/H+ exchangers at their plasma membrane. The second part provides protocols based on intracellular pH measurements and fast ion uptake, which are used to determine the ion selectivity and the kinetic parameters of these exchangers.

Study of the Functions and Activities of Neuronal K-Cl Co-Transporter KCC2 Using Western Blotting

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