This research was supported by Grant 109-2313-B-005 -048 -MY3 from the Ministry of Science and Technology (MOST).

NOTE: The whole flowchart is shown in Figure 1.
1. Isolation and selection of potential Entomopathogenic fungi (EPF)
<ol>
	<li>Collect the soil sample
	<ol>
		<li>Remove 1 cm of the surface soil, and then collect the soil within the 5-10 cm depth using a shovel from each sampling site. 
		NOTE:Sampling sites would be a mountain, forest, or sparsely populated areas to avoid the contamination of artificially sprayed EPF strains. Ensure that areas for the soil samples collection are covered with weed on the surface. Dry soil or damp soil is not suitable for this experiment.</li>
		<li>Record the details of each sampling site, including GPS, elevation, type of field, annual temperature, yearly precipitation, collection time (season), soil type, and pH value.</li>
		<li>Collect 100 g of the soil sample into a plastic bag and maintain it at room temperature if subjecting it to the fungal isolation protocol in the laboratory within 3 h. 
		NOTE: If the sample cannot be used within 3 h, store the soil at room temperature in dark conditions. If the experiment is not performed immediately, the soil sample can be stored at 4 &#176;C for 1 week until the start of the protocol18,19.</li>
	</ol>
	</li>
	<li>Bait and isolate the EPF with mealworm (Tenebrio molitor)
	<ol>
		<li>Place 100 g of the soil sample in a plastic cup (cap diameter = 8.5 cm, height = 12.5 cm), and then place 5 mealworms on the surface of the soil at room temperature in the dark for 2 weeks. 
		NOTE: Other types of plastic cup containers can also be used. If soils are too dry (cracked or sandy), spray sterilized ddH2O (about 5-10 mL) on the soils. The body length c.a. 2.5 cm (14th instar) of T. molitor larvae helps in fungal isolate screens20.</li>
		<li>Observe and record the larvae daily for mortality and mycosis; keep the dead larvae in the cup until 2 weeks for fungal isolation. 
		NOTE: The fungal conidia spore in the soil samples will attach to the mealworm larvae during the above process. The fungal mycosis will be observed as the hyphae grow from the intersegmental membrane, and then the whole body will be covered with the mycelium. Sporulation will start after 7 days and the color of the fungal infection will change to the color of the conidia mass.</li>
		<li>Transfer the dead insects to a clean bench and use a sterile toothpick to collect the conidia. Streak them on a quarter strength Sabouraud dextrose agar medium (&#188; SDA) plate (55 mm) in the laboratory21. Incubate the culture plate at 25 &#176;C for 7 days to obtain the primary culture of fungi. 
		NOTE: The &#188; SDA plate is prepared as follows: Mix 1.5 g of Sabouraud dextrose broth and 3 g of agar in 200 mL of H2O, and then sterilize for 20 min. Aliquot &#188; SDA into each 55 mm Petri dish before solidification. The solidified &#188; SDA plates are stored at 4 &#176;C until use.</li>
		<li>Re-streak each primary culture fungi on one 55 mm &#188; SDA plate in a laminar flow and incubate the culture plate at 25 &#176;C for 7 days to obtain single colonies of fungi.</li>
		<li>Repeat this re-isolation ~2-3 times and observe under light microscopy to obtain single and pure morphological fungal colonies. 
		NOTE: Isolate all EPF using T. molitor-bait and store as described in the following section.The separation, preservation, pure culture, and streaking must be performed in a laminar flow in the subsequent sections.</li>
	</ol>
	</li>
	<li>Store the EPF isolates
	<ol>
		<li>Cut 3 of the 5 mm agar blocks at the edge of each isolated pure fungal cultured plate with a cork borer and place it into a 1.5 mL micro-centrifuge tube as one replicate. 
		NOTE: Three replicates for each fungal isolate are recommended for the EPF strains&#39; storage after 2nd virulence test. Molecular identification is also recommended if storage space is limited.</li>
		<li>Add 250 &#181;L of 0.03% surfactant solution (Table of Materials) and 250 &#181;L of 60% glycerol into the 1.5 mL micro-centrifuge tube using a micropipette; then, vortex for 10 s.</li>
		<li>Seal the 1.5 mL micro-centrifuge tube with paraffin film and precool it in a -20 &#176;C refrigerator for 24 h. Then, transfer the precooled fungal stocks to a -80 &#176;C refrigerator for cryopreservation. 
		NOTE: Extra pure fungal culture plates (aside from the cryo-preserved samples) were used in section 1.4.</li>
	</ol>
	</li>
	<li>1st pathogenicity screen for fungal isolates
	<ol>
		<li>Place five T. molitor larvae directly on the surface of each pure fungal culture plate at 25 &#176;C.</li>
		<li>Observe and record the mycosis and mortality for 10 days. Select the fungal isolate for further analysis. 
		NOTE: Fungal isolates causing 100% mortality are selected for 2nd virulence test to confirm their virulence to T. molitor larvae. Alternatively, the researcher can adjust the criteria as per their own study.</li>
	</ol>
	</li>
	<li>2nd virulence test of fungal isolates 
	NOTE: Based on the 1st pathogenicity screen, recover the selected fungal isolates from -80 &#176;C for the 2nd virulence test. The purpose of the 2nd virulence test is to quantify the pathogenicity of the selected fungal isolates after the 1st round of screening.
	<ol>
		<li>Harvest conidia of each fungal isolate by vortexing for 1 min and count the number of conidia using a hemocytometer.</li>
		<li>Adjust the conidia suspension to a concentration of 1 x 107 conidia/mL in a 0.03% surfactant solution (Table of Materials).</li>
		<li>Spread 10 &#181;L of the fungal suspension onto 55 mm &#188; SDA plates and grow for 7 days at 25 &#176;C in the dark.</li>
		<li>Place five T. molitor larvae directly on the surface of each pure fungal culture plate (c.a. 6 x 107 conidia). Seal the plates with paraffin film and incubate at 25 &#176;C in the dark.</li>
		<li>Observe and record the mycosis and mortality for 10 days.</li>
		<li>Repeat the test (from step 1.51 to 1.5.5) in triplicate for each fungal isolate. 
		NOTE: Fungal isolates causing 100% mortality are selected for 3rd virulence test to confirm their virulence to target the pest.</li>
	</ol>
	</li>
	<li>3rd virulence test of fungal isolates for target pest (Spodoptera litura as an example)
	<ol>
		<li>Repeat steps 1.5.2 to 1.5.6 with selected isolates from 2nd virulence to test virulence against target pest.</li>
		<li>Calculate the LT50 of each fungal isolate22. 
		&#8203;NOTE: The LT50 of each fungal isolate was calculated through generalized linear models (GLMs) using R studio (version 3.4.1); the quasibinomial error distribution and a log link function can be used to account for overdispersion.</li>
	</ol>
	</li>
</ol>
2. Molecular identification of EPF
<ol>
	<li>Extraction of fungal genomic DNA
	<ol>
		<li>Collect c.a. 1 cm2 EPF from the 7-day &#188; SDA plate.</li>
		<li>Extract the fungal genomic DNA&#160;using a fungal genomic DNA extraction kit according to the manufacturer&#39;s instructions23 (Table of Materials).</li>
	</ol>
	</li>
	<li>PCR amplification and DNA sequencing
	<ol>
		<li>Amplify Fungal ITS region by PCR of the DNA sample21 using the PCR Master Mix (2x), ITS1F/ITS4R primer set24 (Table 1) with the following PCR program: 94 &#176;C for 1 min, and then 35 cycles of 94 &#176;C for 30 s, 55 &#176;C for 30 s, and 72 &#176;C for 1 min, followed by a 7 min final extension at 72 &#176;C. 
		NOTE: The ITS1F/ITS4R primer set is for the genus level identification.</li>
		<li>Sequence the PCR by commercial sequencing service.</li>
		<li>Use NCBI BLAST search for similar fungi in the NCBI database and select the relative fungal type species for phylogenetic analysis. 
		NOTE: The fungal species belonging to the genus of Metarhizium or Beauveria should be further identified to the species level with tef-983F/tef-2218R primer set25 (repeat steps 2.1.1 to 2.2.3). For fungi that do not belong to the genera Metarhizium or Beauveria, other molecular markers can be used to identify the species, including DNA lyase (APN2), beta tubulin (BTUB), RNA polymerase II largest subunit (RPB1), RNA polymerase II second largest subunit (RPB2), and 3&#39; portion of translation elongation factor 1 alpha (TEF)25,26.</li>
	</ol>
	</li>
	<li>Phylogenetic analysis
	<ol>
		<li>Use ClustalX 2.1 software27 to align the multiple sequences from steps 2.2.2 and 2.2.3. Trim the conserved sequences region manually with GeneDoc28.</li>
		<li>Perform the phylogenetic analysis by MEGA7 software29 based on the minimum evolution (ME), Neighbor-Joining (NJ), and maximum likelihood (ML) methods. 
		NOTE: Performing all three methods can help to confirm and accurately conclude the classification status. The fungal isolates screened by the 1st pathogenicity screen are used for molecular identification at the genus level. The fungal isolates screened by the 2nd virulence test are used for the species level molecular and morphological identification.</li>
	</ol>
	</li>
</ol>
3. Morphological identification of EPF
<ol>
	<li>Observation of the fungal colony morphology
	<ol>
		<li>Use a camera to capture the&#160;fungal culture colony growth for 7 days, and record the growth, form (fluffy, firm), and color of the colonies.</li>
	</ol>
	</li>
	<li>Observation of conidia and conidiophores
	<ol>
		<li>Scrape conidia from the pure culture fungal colony with an inoculation loop and transfer the spores to a glass slide with 0.1% Tween 80 solution. Then, cover with a coverslip for light microscopic observation of conidia.</li>
		<li>Use a scalpel to cut a 5 mm2 agar block of the hyphal strand at the edge of the fungal colony, and then transfer the agar block to a glass slide.</li>
		<li>Perform the cleaning as follows: Add the 0.1% Tween 80 solution on the agar block with a plastic dropper and wash off most of the excess conidia using tweezers. Then, cover it with a coverslip for lightmicroscopic observation. 
		NOTE: 0.1% Tween 80 can be substituted with another more potent surfactant (Table of Materials) depending on fungal species and hydrophobicity.</li>
		<li>Measure and record the width and length of the conidia and conidiophores to compare the differences between different fungal isolates.</li>
		<li>Use Welch&#39;s ANOVA test and Games-Howell test (post-hoc test) to analyze the conidial width and length of each strain using R studio (version 3.4.1). 
		NOTE: Data analysis of morphological characters can be adjusted by cases. The fungal isolates screened with the 3rd virulence test are used for the physiological characterization and ECN ranking in sections 4 and 5.</li>
	</ol>
	</li>
</ol>
4. Investigation of conidial productivity and thermotolerance
<ol>
	<li>Conidial production assay
	<ol>
		<li>Culture the selected fungal isolate on &#188; SDA medium at 25 &#177; 1 &#176;C in dark for 10 days.</li>
		<li>Prepare 1 mL of the conidial suspension of the fungal isolate in 0.03% surfactant solution and adjust to 1 x 107 conidia/mL as described above.</li>
		<li>Drop three droplets of 10 &#181;L of conidial suspension on&#188; SDA and incubate at 25 &#176;C in the dark for 7, 10, and 14 days to count the sporulation of fungi. 
		NOTE: 10 &#181;L is the best volume to collect the 5 mm block with even fungal sporulation after fungal growth for 7-14 days.</li>
		<li>Use the cork borer to detach 5 mm agar block from the center of the colony and transfer into 1 mL of 0.03% surfactant solution (Table of Materials) in a 1.5 mL micro-centrifuge tube at each time point.</li>
		<li>Vortex the tube at 3,000 rpm at room temperature for 15 min and use a hemocytometer to count the number of conidia. 
		NOTE: The formula used for counting is the number of conidia per 25 squares of the smallest cell (size = 0.025 mm2; chamber depth = 0.1 mm): 
		Total No of conidia in 5 squares&#160;&#247; 80&#160;&#215; (4 &#215; 106)</li>
		<li>Repeat three times for each isolate.</li>
	</ol>
	</li>
	<li>Thermotolerance assay
	<ol>
		<li>Culture the selected fungal isolate on &#188; SDA medium at 25 &#177; 1 &#176;C in dark for 10 days.</li>
		<li>Prepare 1 mL of the conidial suspension of fungal isolate in 0.03% surfactant solution and adjust to 1 x 107 conidia/mL as described above.</li>
		<li>Vortex the conidial suspension and heat it in a 45 &#176;C dry bath for 0, 30, 60, 90, and 120 min. Drop three droplets of 5 &#181;L of the conidial suspension on 55 mm &#188; SDA medium at each time point post heat-exposure and incubate at 25 &#177; 1 &#176;C for 18 h. 
		NOTE: Avoid spreading the fungal droplets to be able to better focus on the area.</li>
		<li>Count the number of germinated conidia spores with five randomly selected fields under 200x light microscopy to determine germination rate.</li>
		<li>Perform three replicates for each isolate.</li>
	</ol>
	</li>
</ol>
5. Effective conidia number (ECN) ranking
<ol>
	<li>ECN calculation 
	NOTE: Obtain the conidial production and thermotolerance data of each potential fungal strain before calculating the total ECN21.
	<ol>
		<li>Calculate the fold-change (FC) of conidial production at each time point: 
		<img alt="Equation 1" src="/files/ftp_upload/62882/62882eq01.jpg" /> 
		where, x = time point for data collection; ncp&#160;= number of conidia after each day of growth; and I = initial number of seeded conidia.</li>
		<li>Calculate the conidia number under the stress treatment at each time point using the following formula: 
		<img alt="Equation 2" src="/files/ftp_upload/62882/62882eq02.jpg" /> 
		Where, y = the ECN of the time point under treatment; TT0 = the germination rate of conidia not undergoing heat stress (= germination rate of 0 min heat treatment); TTz = stress coefficient is the conidia germination rate at different times of heat treatment (z).</li>
		<li>Calculate the total ECN using the following formula: 
		<img alt="Equation 3" src="/files/ftp_upload/62882/62882eq03.jpg" /></li>
		<li>Compare the ECN of each fungal strain.</li>
	</ol>
	</li>
	<li>Principal component analysis (PCA) of fungal strains 
	NOTE:The PCA analysis confirms the ranking of ECN and helps in understanding the correlation between the physiological character values. Compare the ECN values and select EPF isolates having higher ECN values.</li>
	<li>Use R software to create PCA by coding: 
	#Input PCA data file 
	&#8203;a = read.table(&#34;PCA.csv&#34;,sep=&#39;,&#39;,header=T)
	<ol>
		<li># Processing sample data 
		row.names(a) &#60;- c(&#34;NCHU-9&#34;,&#34;NCHU-11&#34;, &#34;NCHU-64&#34;, &#34;NCHU-69&#34;, &#34;NCHU-95&#34;, &#34;NCHU-113&#34;) 
		X=row.names(a) 
		df&#60;- a[2:11]</li>
		<li>#PCA calculation 
		pca &#60;- prcomp(df, center = TRUE, scale = TRUE) 
		vars &#60;- (pca$sdev)^2 
		pc1_percent = vars[1] / sum(vars) 
		pc2_percent = vars[2] / sum(vars) 
		value = pca$x</li>
		<li>#Output PCA visualization file 
		png(file = &#39;pca.png&#39;, height = 2000, width = 2000, res = 300) 
		NOTE: Use 7 to 14 days conidial production and all thermotolerance data to execute principal component analysis (PCA) for confirming the ECN ranking.</li>
	</ol>
	</li>
	<li>Select the best-performing fungal strains based on ECN or PCA and perform the virulence test of target pests for further research.</li>
</ol>

The authors declare there is no conflict of interest involved in this work.

Entomopathogenic fungi (EPF) have been used for insect control. There are several methods to isolate, select, and identify EPF30,31,32. Comparing the different types of insect bait methods, Beauveria bassiana and Metarhizium anisopliae were commonly found in insect baits6,12,13,14. Among these insect baits, Galleria mellonella and Tenebrio molitor showed high recovery rates of Beauveria and Metarhizium spp. As a matter of fact, the utility of the mealworm (T. molitor)-bait method was demonstrated as a convenience method for isolation of EPF from soil samples17,21. Nonetheless, it has been reported that used insects as bait would show the bias to isolate specific fungal species3,33. Therefore, combination of different insect species (i.e., Galleria mellonella and T. molitor together) to bait the EPF from the soil samples might increase the diversity of EPF34.
To evaluate the insect killing activity, there are two rounds of screening by mealworm (T. molitor) in the current protocol to select the promising fungal strains for further study. Following this process, the number of fungal isolates, which are isolated from soil samples, could be dramatically reduced and restricted to fungal isolates that showed high insecticidal activity after the 1st and 2nd screening. Large reduction of the fungal isolates for the next round of screening save time cost and labor-consuming. It could be also noted that the selected fungal isolates showed similar trends of pathogenicity between mealworm (T. molitor) and tobacco cutworm(Spodoptera litura), demonstrating a consistent testing of pathogenicity of different insect species and could be further extended to other crop pests21. In addition, the calculation of the ECN based on the physiological tests could facilitate the selection of potential fungal strains to be used in crop fields. Similar selective methods were mentioned by other reports, while the factors such as abiotic and strain characteristics have not been included12,8,31,35,36,37. Therefore, these strains may be affected by environmental factors resulting in an influence on the performance of fungal germination and thereby difficulty to be commercialized. This consequence is also the main reason for the inapplicability of laboratory strains in the field38.
From the morphological identification, further efforts should be directed toward finding the clear structure of conidiophore and observe the different characteristics of each fungal strain. Studies can include various methods for solving the difficult morphological identification39. However, the morphological identification fails to distinguish closely related fungal species; therefore, it is necessary to integrate the data of molecular identification. The internal transcribed spacer (ITS) region showed the genus level discrimination, while other molecular markers (i.e., tef for Metarhizium, bloc for Beauveria) are needed for the identification at the species level26,40,41.
In the physiological characterization, to reduce the standard deviation of the experiments, either the machine or manual vortex for at least 10 min at max rpm is suggested21. Thoroughly mixed conidia suspension would increase the consistency of the results of thermotolerance assay and conidial production assay. On the other hand, in the conidial production assay, the counted conidia number under a fixed area (5 mm block in the central part of fungal colony in this study) on the cultured plate at different time growth raised the problem that different fungal species and even different strains revealed different performance of the growth compactness of the hyphae, which might lead to the non-representativeness of the sampling. Therefore, a rigorous test method for conidia production can improve the problem, such as accurately count the number of conidia of whole fungal colony and normalize with the growth area42.
The effective conidia number (ECN) formula is designed based on the influence of environmental stress against EPF conidia, that is, simulate conidia under the condition of wild environment to select the promising fungal strains for commercialization21. In this protocol, the data of conidia production and heat treatment were used for the calculation of the total ECN value of each promising fungal strain, following the previous study21. Further, under a natural environment, except the temperature, other environmental stress, such as humidity, ultraviolet radiation (UV), and host could influence conidia germination. Especially, the UV stress is a main factor affecting conidia germination because the high-energy free radicals (such as peroxides, hydroxyl groups, and singlet oxygen) generated by UV may reduce pathogenicity and the persistence of microbial pesticides43. Thus, UV stress could be further included in the ECN formula in the future. To avoid UV stress, the formula should contain oil or sodium alginate to increase the UV tolerance of conidia44,45,46, which confirms that potential strains have practicality for pest control47.
The present protocol provided a method for quick and precise isolation of potential EPF strains to construct T. molitor-mediated EPF library. This is the basis and is necessary for the development of biological control research. Moreover, the ECN formula could be flexibly improved to help researchers grasp the potential of EPF and develop it into a commodity for use in agricultural systems.

Currently, entomopathogenic fungi (EPF) are widely used in the microbial control of agricultural, forest, and horticultural pests. The advantages of EPF are its wide host ranges, good environmental adaptability, ecofriendly nature, and that it can be used with other chemicals to show the synergistic effect for integrated pest management1,2. For the application as a pest control agent, it is necessary to isolate a large number of EPF from either diseased insects or the natural environment.
The sampling of these organisms from their hosts helps in understanding the geographic distribution and prevalence rate of EPF in natural hosts3,4,5. However, the collection of fungal infected insects are usually limited by environmental factors and insect populations in the field4. Considering that insect hosts will die after EPF infection and then fall into the soil, isolation of EPF from soil samples might be a stable resource3,6. For example, saprophytes are known to use the dead host as their resource for growth. The soil bait and selective medium systems have been widely used to detect and isolate EPF from the soil3,4,7,8,9,10.
In the selective medium method, the diluted soil solution is plated onto a medium containing broad-spectrum antibiotics (e.g., chloramphenicol, tetracycline, or streptomycin) to inhibit the growth of bacteria2,3,9,11. However, it has been reported that this method may distort the strain&#39;s diversity and density and can cause an over- or under-estimation of many microbial communities6. Moreover, the isolated strains are less pathogenic and compete with saprophytes during isolation. It is difficult to isolate EPF from the diluted soil solution3. Instead of using a selective medium, the soil bait method isolates EPF from the infected dead insects, which can be stored for 2-3 weeks, thereby providing a more efficient and standard EPF separation method3,4,7,6. Because the method is easy to operate, one can isolate a variety of pathogenic strains at a low cost4. Therefore, it is widely used by many researchers.
Upon comparing the different types of insect bait systems, Beauveria bassiana and Metarhizium anisopliae are the most common EPF species that are found in insects belonging to the Hemiptera, Lepidoptera, Blattella, and Coleoptera6,12,13,14. Among these insect baits, Galleria mellonella (order Lepidoptera) and Tenebrio molitor (order Coleoptera)&#160;show higher recovery rates of Beauveria and Metarhizium spp., when compared with other insects. Therefore, G. mellonella and T. molitor are commonly used for insect baiting. Over the years, the United States Department of Agriculture (USDA) has established an EPF Library (Agricultural Research Service Collection of EPF cultures, ARSEF) that contains a wide variety of species, including 4081 species of Beauveria spp., 18 species of Clonostachys spp., 878 species of Cordyceps spp., 2473 species of Metarhizium spp., 226 species of Purpureocillium spp., and 13 species of Pochonia spp. among others15. Another EPF Library was constructed by the Entomology Research Laboratory (ERL) from the University of Vermont in the United States for c.a. 30 years. It includes 1345 strains of EPF from the United States, Europe, Asia, Africa, and the Middle East16.
To control local or invasion pests in Taiwan, isolation and selection of indigenous EPF is required. Therefore, in this protocol, we have modified and described the procedure of the soil bait method and combined it with the insect bait (mealworm, Tenebrio molitor) system17. Based on this protocol, an EPF library was established. Two rounds of screening (quantification of inoculation) were performed for the preliminary EPF isolates. EPF isolates showed pathogenicity to insects. The potential strains were subjected to morphological and molecular identifications and further analyzed by the thermotolerance and conidial production assay. Further, a concept of effective conidia number (ECN) was also proposed. Using ECN formula and principal component analysis (PCA), the potential strains were analyzed under simulated environmental pressure to complete the process of establishing and screening the EPF library. Subsequently, pathogenicity of promising EPF strains were tested for the target pest (e.g., Spodoptera litura). The current protocol integrates thermotolerance and conidial production data into the ECN formula and PCA analysis, which can be used as a standard ranking system for EPF related research.

<table><tbody><tr><td>Agar Bacteriological grade</td><td>BIOMAN SCIENTIFIC Co., Ltd.</td><td>AGR001</td><td>Suitable in most cell culture/molecular, biology applications.</td></tr><tr><td>AGAROSE, Biotechnology Grade</td><td>BIOMAN SCIENTIFIC Co., Ltd.</td><td>AGA001</td><td>For DNA electrophoresis.</td></tr><tr><td>BioGreen Safe DNA Gel Buffer</td><td>BIOMAN</td><td>SDB001T</td><td></td></tr><tr><td>Brass cork borer</td><td>Dogger</td><td>D89A-44001</td><td></td></tr><tr><td>Canon kiss x2</td><td>Canon</td><td>EOS 450D</td><td>For record strain colony morphology</td></tr><tr><td>Constant temperature incubator</td><td>Yihder Co., Ltd.</td><td>LE-509RD</td><td>Fungal keeping.</td></tr><tr><td>cubee Mini-Centrifuge</td><td>GeneReach</td><td>MC-CUBEE</td><td></td></tr><tr><td>DigiGel 10 Digital Gel Image System</td><td>TOPBIO</td><td>DGIS-12S</td><td></td></tr><tr><td>Finnpipette F2 0.2 to 2 &amp;micro;L Pipette</td><td>Thermo Scientific</td><td>4642010</td><td></td></tr><tr><td>Finnpipette F2 1 to 10 &amp;micro;L Pipette</td><td>Thermo Scientific</td><td>4642030</td><td></td></tr><tr><td>Finnpipette F2 10 to 100 &amp;micro;L Pipette</td><td>Thermo Scientific</td><td>4642070</td><td></td></tr><tr><td>Finnpipette F2 100 to 1000 &amp;micro;L Pipette</td><td>Thermo Scientific</td><td>4642090</td><td></td></tr><tr><td>Finnpipette F2 2 to 20 &amp;micro;L Pipette</td><td>Thermo Scientific</td><td>4642060</td><td></td></tr><tr><td>Finnpipette F2 20 to 200 &amp;micro;L Pipette</td><td>Thermo Scientific</td><td>4642080</td><td></td></tr><tr><td>GeneAmp PCR System 9700</td><td>Applied Biosystems</td><td>4342718</td><td></td></tr><tr><td>GenepHlow Gel/PCR Kit</td><td>Geneaid</td><td>DFH100</td><td></td></tr><tr><td>Genius Dry Bath Incubator</td><td>Major Science</td><td>MD-01N</td><td></td></tr><tr><td>Graduated Cylinder Custom A 100mL</td><td>SIBATA</td><td>SABP-1195906</td><td>Measure the volume of reagents.</td></tr><tr><td>Hand tally counter</td><td>SDI</td><td>NO.1055</td><td></td></tr><tr><td>Hemocytometer</td><td>bioman</td><td>AP-0650010</td><td>Calculate the number of spore</td></tr><tr><td>Inoculating loop</td><td>Dogger</td><td>D8GA-23000</td><td></td></tr><tr><td>lid</td><td>IDEAHOUSE</td><td>RS92004</td><td></td></tr><tr><td>Micro cover glass</td><td>MUTO PURE CHEMICALS CO.,LTD</td><td>24241</td><td></td></tr><tr><td>Microscope imaging system</td><td>SAGE VISION CO.,LTD</td><td>SGHD-3.6C</td><td></td></tr><tr><td>Microscope Slides</td><td>DOGGER</td><td>DG75001-07105</td><td></td></tr><tr><td>Mupid-2plus DNA Gel Electrophoresis</td><td>ADVANCE</td><td>AD110</td><td></td></tr><tr><td>Nikon optical microscope</td><td>SAGE VISION CO.,LTD</td><td>Eclipse CI-L</td><td></td></tr><tr><td>Plastic cup</td><td>IDEAHOUSE</td><td>CS60016</td><td></td></tr><tr><td>Presto Mini gDNA Yeast Kit</td><td>Geneaid</td><td>GYBY300</td><td>Fungal genomic DNA extraction kit</td></tr><tr><td>Sabouraud Dextrose Broth (Sabouraud Liquid Medium)</td><td>HiMedia Leading BioSciences Company</td><td>M033</td><td>Used for cultivation of yeasts, moulds and aciduric microorganisms.</td></tr><tr><td>Scalpel Blade No.23</td><td>Swann-Morton</td><td>310</td><td></td></tr><tr><td>Scalpel Handle No.4</td><td>AGARWAL SURGICALS</td><td>SSS -FOR-01-91</td><td></td></tr><tr><td>Shovel</td><td>Save &amp;amp; Safe</td><td>A&amp;nbsp;-1580242&amp;nbsp;-00</td><td></td></tr><tr><td>Silwet L-77</td><td>bioman(phytotech)</td><td>S7777</td><td>Surfactant</td></tr><tr><td>Sorvall Legend Micro 17 Microcentrifuge</td><td>Thermo Scientific</td><td>75002403</td><td></td></tr><tr><td>Steel Tweezers</td><td>SIPEL ELECTRONIC SA</td><td>GG-SA</td><td></td></tr><tr><td>Sterile Petri Dish</td><td>BIOMAN SCIENTIFIC Co., Ltd.</td><td>1621</td><td>Shallow cylindrical containers with fitted lids, specifically for microbiology or cell culture use.</td></tr><tr><td>ThermoCell MixingBlock</td><td>BIOER</td><td>MB-101</td><td></td></tr><tr><td>Tween 80</td><td>FUJIFILM Wako Pure Chemical Corporation</td><td>164-21775</td><td></td></tr><tr><td>TwinGuard ULT Freezer</td><td>Panasonic Healthcare Holdings Co., Ltd.</td><td>MDF-DU302VX</td><td>-80&amp;deg;C sample stored.</td></tr><tr><td>Vertical floor type cabinet</td><td>Chih Chin</td><td>BSC-3</td><td>Fungal operating culturing.</td></tr><tr><td>Vortex Genie II</td><td>Scientific</td><td>SIG560</td><td></td></tr><tr><td>Zipper storage bags</td><td>Save &amp;amp; Safe</td><td>A&amp;nbsp;-1248915&amp;nbsp;-00</td><td></td></tr><tr><td>100 bp DNA Ladder</td><td>Geneaid</td><td>DL007</td><td></td></tr><tr><td>-20&amp;deg;C Freezer</td><td>FRIGIDAIRE</td><td>Frigidaire FFFU21M1QW</td><td>-20&amp;deg;C sample and experimental reagents stored.</td></tr><tr><td>2X SuperRed PCR Master Mix</td><td>TOOLS</td><td>TE-SR01</td><td></td></tr><tr><td>50X TAE Buffer</td><td>BIOMAN</td><td>TAE501000</td><td></td></tr></tbody></table>

isolation and selection of entomopathogenic fungi from soil samples and evaluation of fungal virulence against insect pests

Entomopathogenic fungi (EPF) are one of the microbial control agents for integrated pest management. To control local or invasive pests, it is important to isolate and select indigenous EPF. Therefore, the soil bait method combined with the insect bait (mealworm, Tenebrio molitor) system was used in this study with some modifications. The isolated EPF were then subjected to the virulence test against the agricultural pest Spodoptera litura. Furthermore, the potential EPF strains were subjected to morphological and molecular identifications. In addition, the conidia production and thermotolerance assay were performed for the promising EPF strains and compared; these data were further substituted into the formula of effective conidia number (ECN) for laboratory ranking. The soil bait-mealworm system and the ECN formula can be improved by replacing insect species and integrating more stress factors for the evaluation of commercialization and field application. This protocol provides a quick and efficient approach for EPF selection and will improve the research on biological control agents.

Isolation and selectionof potential Entomopathogenic fungi (EPF) 
By using the Tenebrio molitor-mediated Entomopathogenic fungi (EPF) library construction method, the number of fungi without insect-killing activity would be excluded; thus, the isolation efficiency and selection of EPF could be largely increased. During the application of this method, the information of sampling sites, soil samples, and the fungal germination rates were recorded (Table 2). Based on our previous data, a total of 101 fungal isolates were obtained from 172 soil samples, indicating a high isolation efficiency of 64%. Among the 101 fungal isolates, 26 isolates showed insecticidal activity against T. molitor (100% mortality) after the 1st pathogenicity screening, hence the elimination of fungal isolates was 26/101 = 25.7%. In the 2nd&#160;virulence test, the high virulence of the 26 fungal isolates against T. molitor was further demonstrated, 12 of which showed high pathogenicity against the T. molitor larvae (100% mortality at 5 days post inoculation) (Figure 2A). These were used to evaluate the virulence test against the agricultural pest. Based on the data of the 3rd&#160;virulence test mortality and LT50, a total of six fungal isolates (NCHU-9, 11, 64, 69, 95, and 113) revealed rapid insect-killing activity against Spodoptera litura (LT50 = 2.94, 2.22, 2.84, 2.57, 2.96, and 1.13),&#160;assessed using the physiological assay and effective conidia number (ECN) (Figure 2B).
Molecular identification of EPF 
To better understand the fungal taxonomic positions, 26 isolates from the 1st pathogenicity screening were subjected to molecular analysis based on the ITS region (Figure 3A). The result showed that these fungal isolates could be clearly divided into seven genera, including Beauveria, Clonostachys, Fusarium, Cordyceps, Penicillium, Purpureocillium,&#160;and Metarhizium (Figure 3A). Based on the ITS1-5.8S-ITS2 region, the genus classification of EPF was accurately confirmed, while the species level is still indistinguishable. Therefore, the sequence of the tef region is used to clearly classify the species level for 12 promising EPF isolates from the virulence test against the agricultural pest. The molecular identification of the 12 isolates showed that 11 isolates belong to Metarhizium and contained four species, including M. lepidiotae (NCHU-9, NCHU-102), M. pinghaense (NCHU-10, NCHU-11, NCHU-30, NCHU-32, NCHU-64), M. brunneum (NCHU-27, NCHU-29), and M. anisopliae (NCHU-69, NCHU-95). The remaining isolate was identified as B. australis (NCHU-113) (Figure 3B,C).According to the above result, the&#160;sequence region of tef can effectively distinguish the genus Metarhizium at species level, while other species need to find other sequence regions as molecular markers to distinguish the species.
Morphological identification of EPF 
Through the cleaning method (step 3.2.3) of fungi morphological observations, the structures of conidiophores could be seen clearly with 0.1% Tween 80 solution (Figure 4A), and these observations could serve as a benchmark to measure the size of the structure and take a photo record. The color, shape, and arrangement of the conidia can be seen through microscopic observations of the colony conidia (Figure 4B,C). After observation, the sizes of conidia and conidiophore shapes could be further measured and statistically compared (Table 3).
Investigation of conidial productivity, thermotoleranceand ECN ranking 
The ECN formula, which was proposed by the previous report21, could help with the selection of a high stress-tolerance EPF based physiological character. The ECN combines the conidia production and thermotolerance data of each EPF (Figure 5A,B), which means high viability of fungal strain when ECN value is high (Figure 5). Moreover, principal component analysis (PCA) visualization was used to verify the results from the ECN formula. The result revealed a high coordination between PCA and ECN, suggesting that the ECN formula could be used to evaluate the hierarchy of viability related parameters and development potential of fungi to field application and further commercialization (Figure 5C,D).
<img alt="Figure 1" class="xfigimg" src="/files/ftp_upload/62882/62882fig01.jpg" /> 
Figure 1: Illustration of Tenebrio molitor-mediated Entomopathogenic fungi (EPF) library construction. Part 1: Fungal isolation from soil sample; Part 2: Pathogenicity and virulence-based screening and fungal identification; Part 3. Physiological characterization and fungal ranking. ECN = Effective conidia number; and PCA = Principal component analysis. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/62882/62882fig01large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 2" class="xfigimg" src="/files/ftp_upload/62882/62882fig02.jpg" /> 
Figure 2: Mortality of mealworms and Spodoptera litura for selection of promising Entomopathogenic fungi (EPF) isolates. (A) 26-selected fungal 2nd mealworm virulence test; The mycoses of 12 rapid killing and high virulence fungal isolates are shown in parallel. (B) 12 fungal isolates were selected for virulence test against S. litura. Test on each fungal strain was repeated three times. d.p.i. = days post inoculation. Modified figure and legend reproduced with permission of the Fronteris21. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/62882/62882fig02large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 3" class="xfigimg" src="/files/ftp_upload/62882/62882fig03.jpg" /> 
Figure 3: The phylogenetic analysis of Entomopathogenic fungi (EPF) strains at (A) Genus-level based on ITS region and (B-C) Species-level based on tef. The phylogenetic analysis of ITS region and tef were constructed using the maximum likelihood (ML), minimum evolution (ME), and neighbor-joining (NJ) methods. Bootstrap analyses were performed to evaluate the robustness of the phylogenies using 1,000 replicates, and bootstrap proportions greater than 50% are indicated above branches. Bold = Ex-type strains. The red and green arrows indicate the promising EPF. Modified figure and legend reproduced with permission of the Fronteris21. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/62882/62882fig03large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 4" class="xfigimg" src="/files/ftp_upload/62882/62882fig04.jpg" /> 
Figure 4: Microscopic examination of Entomopathogenic fungi (EPF) (M. anisopliae) morphology. Observation of conidiophores (A) after washing. (B) The observation of conidia shape and color. (C) Arrangement of conidia and bundles of spore strings (SS) of M. anisopliae; Cp = conidiophores; cc = cylindrical conidia. Scale bar = 10 &#181;m. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/62882/62882fig04large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 5" class="xfigimg" src="/files/ftp_upload/62882/62882fig05.jpg" /> 
Figure 5: Physiological characterization of six potential isolates and the effective conidia number (ECN) analysis. (A) Conidial production assay. (B) Thermotolerance assay. (C) The bar plot of ECN values. (D) Principal components analysis showed the distribution of each strain. Modified figure and legend reproduced with permission of the Fronteris21. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/62882/62882fig05large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>Primer name</td>
			<td>Amplicon Size (bp)</td>
			<td colspan="2">Sequence(5&#39;-3&#39;)</td>
			<td>Region</td>
			<td>Reference</td>
		</tr>
		<tr>
			<td>ITS1F</td>
			<td rowspan="2">550</td>
			<td colspan="2">TCCGTAGGTGAACCTGCGG</td>
			<td rowspan="2">ITS</td>
			<td rowspan="2">25</td>
		</tr>
		<tr>
			<td>ITS4R</td>
			<td colspan="2">TCCTCCGCTTATTGATATGC</td>
		</tr>
		<tr>
			<td>tef-983F</td>
			<td rowspan="2">1000</td>
			<td colspan="2">GCYCCYGGHCAYCGTGAYTTYAT</td>
			<td rowspan="2">tef</td>
			<td rowspan="2">26, 27, 41, 42</td>
		</tr>
		<tr>
			<td>tef-2218R</td>
			<td colspan="2">ATGACACCRACRGCRACRGTYTG</td>
		</tr>
	</tbody>
</table>
Table 1: Primer pairs for fungal identification.
Table 2: The parameters recorded for Tenebrio molitor-mediated EPF library construction method are listed below. NIU = the campus of National Ilan University. NCHU = the campus of National Chung Hsing University. Modified table and legend reproduced with permission of the Fronteris21. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/62882/20210612_Table_2.xlsx" target="_blank">Please click here to download this Table.</a>
<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>Species</td>
			<td>Strain</td>
			<td>Phialides &#956;m&#177;SD*</td>
			<td>Conidia &#956;m&#177;SD*</td>
		</tr>
		<tr>
			<td>Metarhizium lepidiotae</td>
			<td>NCHU-9</td>
			<td>Cylindrical, 7.3&#177;0.67b&#215;2.4&#177;0.36a</td>
			<td>Cylindrical, 6.5&#177;0.45a&#215;2.7&#177;0.13b</td>
		</tr>
		<tr>
			<td>Metarhizium pinghaense</td>
			<td>NCHU-11</td>
			<td>Cylindrical, 8.6&#177;0.68ab&#215;2.6&#177;0.30a</td>
			<td>Cylindrical, 6.3&#177;0.41b&#215;2.7&#177;0.16b</td>
		</tr>
		<tr>
			<td>Metarhizium pinghaense</td>
			<td>NCHU-64</td>
			<td>Cylindrical, 10.5&#177;1.54a&#215;2.4&#177;0.32a</td>
			<td>Cylindrical, 6.8&#177;0.53a&#215;2.9&#177;0.31a</td>
		</tr>
		<tr>
			<td>Metarhizium anisopliae</td>
			<td>NCHU-69</td>
			<td>Cylindrical, 9.4&#177;1.58a&#215;2.7&#177;0.32a</td>
			<td>Cylindrical, 6.3&#177;0.34b&#215;2.6&#177;0.19b</td>
		</tr>
		<tr>
			<td>Metarhizium anisopliae</td>
			<td>NCHU-95</td>
			<td>Cylindrical, 9.6&#177;0.87a&#215;2.6&#177;0.29a</td>
			<td>Cylindrical, 6.0&#177;0.82b&#215;2.9&#177;0.29a</td>
		</tr>
		<tr>
			<td>Beauveria australis</td>
			<td>NCHU-113</td>
			<td>Ellipsoid, NA&#215;2.6&#177;0.57</td>
			<td>Globose, 2.3&#177;0.24&#215;2.3&#177;0.24</td>
		</tr>
		<tr>
			<td colspan="4">*Statistical analysis was performed based on the Welch&#39;s ANOVA test by using R studio.</td>
		</tr>
		<tr>
			<td colspan="4">&#167; Modified table and legend reproduced with permission of the Fronteris (23).</td>
		</tr>
	</tbody>
</table>
Table 3: An example of morphological observations of six promising entomopathogenic fungal isolates. Statistical analysis was performed based on the Welch&#39;s ANOVA test by using R studio. Modified table and legend reproduced with permission of the Fronteris21.

Watch this Scientific Journal Video about Isolation and Selection of Entomopathogenic Fungi from Soil Samples and Evaluation of Fungal Virulence against Insect Pests at JoVE.com

Isolation and Selection of Entomopathogenic Fungi from Soil Samples and Evaluation of Fungal Virulence against Insect Pests

Here we present a protocol based on the&#160;mealworm (Tenebrio molitor)-bait system that was used for isolating and selecting entomopathogenic fungi (EPF) from soil samples. An effective conidia number (ECN) formula is used to select high stress tolerant EPF based on physiological characteristics for pest microbial control in the field.

Entomopathogenic fungi (EPF) are one of the microbial control agents for integrated pest management. To control local or invasive pests, it is important ...

isolation-selection-entomopathogenic-fungi-from-soil-samples

Nanyang Technological University

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JoVE Journal

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9.2K Views.  National Chung Hsing University. De methode voor entomopathogene schimmelisolatie is belangrijk voor de ontwikkeling van microbiële bestrijders. Dit protocol kan worden gebruikt om entomopathogene schimmelisolaten met hoge virulentie uit de bodemmonsters te isoleren en te selecteren. Deze techniek omvat drie tanden van pathogeniciteitsscreening en combineert de thermotolerantie- en conidia-productietest om de effectieve conidia-getalrangschikking te maken.De methode kan helpen bij het selecteren van hoge virulentie e...

Video: Isolation and Selection of Entomopathogenic Fungi from Soil Samples and Evaluation of Fungal Virulence against Insect Pests

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Entomopathogenic nematodes are soil-inhabiting roundworms that parasitize a wide range of insects. We demonstrate sampling methods used for the isolation of these nematodes from the soil using two techniques: the insect baiting and the modified White trap, for the recovery of nematodes from soil samples and infected insect cadavers, respectively.

Entomopathogenic nematodes (a.k.a. EPN) represent a group of soil-inhabiting nematodes that parasitize a wide range of insects. These nematodes belong to ...

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Scanning Electron Microscopy (SEM) Protocols for Problematic Plant, Oomycete, and Fungal Samples

Common problems in the processing of biological samples for observations with the scanning electron microscope (SEM) include cell collapse, treatment of samples from wet microenvironments and cell destruction. Using young floral tissues, oomycete cysts, and fungi spores (Agaricales) as examples, specific protocols to process delicate samples are described here that overcome some of the main challenges in sample treatment for image capture under the SEM.
Floral meristems fixed with FAA (Formalin-Acetic-Alcohol) and processed with the Critical Point Dryer (CPD) did not display collapsed cellular walls or distorted organs. These results are crucial for the reconstruction of floral development. A similar CPD-based treatment of samples from wet microenvironments, such as the glutaraldehyde-fixed oomycete cysts, is optimal to test the differential growth of diagnostic characteristics (e.g., the cyst spines) on different types of substrates. Destruction of nurse cells attached to fungi spores was avoided after rehydration, dehydration, and the CPD treatment, an important step for further functional studies of these cells.
The protocols detailed here represent low-cost and rapid alternatives for the acquisition of good-quality images to reconstruct growth processes and to study diagnostic characteristics.

Scanning Electron Microscopy SEM Protocols for Problematic Plant, Oomycete, and Fungal Samples

Problems in the processing of biological samples for scanning electron microscopy observation include cell collapse, treatment of samples from wet microenvironments and cell destruction. Low-cost and relatively rapid protocols suited for preparing challenging samples such as floral meristems, oomycete cysts, and fungi (Agaricales) are compiled and detailed here.

Common problems in the processing of biological samples for observations with the scanning electron microscope (SEM) include cell collapse, treatment of ...

Preparation and Observation of Thick Biological Samples by Scanning Transmission Electron Tomography

This report describes a protocol for preparing thick biological specimens for further observation using a scanning transmission electron microscope. It also describes an imaging method for studying the 3D structure of thick biological specimens by scanning transmission electron tomography. The sample preparation protocol is based on conventional methods in which the sample is fixed using chemical agents, treated with a heavy atom salt contrasting agent, dehydrated in a series of ethanol baths, and embedded in resin. The specific imaging conditions for observing thick samples by scanning transmission electron microscopy are then described. Sections of the sample are observed using a through-focus method involving the collection of several images at various focal planes. This enables the recovery of in-focus information at various heights throughout the sample. This particular collection pattern is performed at each tilt angle during tomography data collection. A single image is then generated, merging the in-focus information from all the different focal planes. A classic tilt-series dataset is then generated. The advantage of the method is that the tilt-series alignment and reconstruction can be performed using standard tools. The collection of through-focal images allows the reconstruction of a 3D volume that contains all of the structural details of the sample in focus.

This report describes a sample preparation protocol and specific imaging conditions for performing scanning transmission electron tomography of thick biological specimens.

This report describes a protocol for preparing thick biological specimens for further observation using a scanning transmission electron microscope. It ...

Quasi-metagenomic Analysis of Salmonella from Food and Environmental Samples

Quasi-metagenomics sequencing refers to the sequencing-based analysis of modified microbiomes of food and environmental samples. In this protocol, microbiome modification is designed to concentrate genomic DNA of a target foodborne pathogen contaminant to facilitate the detection and subtyping of the pathogen in a single workflow. Here, we explain and demonstrate the sample preparation steps for the quasi-metagenomics analysis of Salmonella enterica from representative food and environmental samples including alfalfa sprouts, ground black pepper, ground beef, chicken breast and environmental swabs. Samples are first subjected to the culture enrichment of Salmonella for a shortened and adjustable duration (4&#8211;24 h). Salmonella cells are then selectively captured from the enrichment culture by immunomagnetic separation (IMS). Finally, multiple displacement amplification (MDA) is performed to amplify DNA from IMS-captured cells. The DNA output of this protocol can be sequenced by high throughput sequencing platforms. An optional quantitative PCR analysis can be performed to replace sequencing for Salmonella detection or assess the concentration of Salmonella DNA before sequencing.

Quasi-metagenomic Analysis of Salmonella from Food and Environmental Samples

Here, we present a protocol to prepare DNA samples from food and environmental microbiomes for concerted detection and subtyping of Salmonella through quasimetagenomic sequencing. The combined use of culture enrichment, immunomagnetic separation (IMS), and multiple displacement amplification (MDA) allows effective concentration of Salmonella genomic DNA from food and environmental samples.&#160;

Quasi-metagenomics sequencing refers to the sequencing-based analysis of modified microbiomes of food and environmental samples. In this protocol, ...

Isolation of High Quality Murine Atrial and Ventricular Myocytes for Simultaneous Measurements of Ca2+ Transients and L-Type Calcium Current

Mouse models play a crucial role in arrhythmia research and allow studying key mechanisms of arrhythmogenesis including altered ion channel function and calcium handling. For this purpose, atrial or ventricular cardiomyocytes of high quality are necessary to perform patch-clamp measurements or to explore calcium handling abnormalities. However, the limited yield of high-quality cardiomyocytes obtained by current isolation protocols does not allow both measurements in the same mouse. This article describes a method to isolate high-quality murine atrial and ventricular myocytes via retrograde enzyme-based Langendorff perfusion, for subsequent simultaneous measurements of calcium transients and L-type calcium current from one animal. Mouse hearts are obtained, and the aorta is rapidly cannulated to remove blood. Hearts are then initially perfused with a calcium-free solution (37 &#176;C) to dissociate the tissue at the level of intercalated discs and afterwards with an enzyme solution containing little calcium to disrupt extracellular matrix (37 &#176;C). The digested heart is subsequently dissected into atria and ventricles. Tissue samples are chopped into small pieces and dissolved by carefully pipetting up and down. The enzymatic digestion is stopped, and cells are stepwise reintroduced to physiologic calcium concentrations. After loading with a fluorescent Ca2+-indicator, isolated cardiomyocytes are prepared for simultaneous measurement of calcium currents and transients. Additionally, isolation pitfalls are discussed and patch-clamp protocols and representative traces of L-type calcium currents with simultaneous calcium transient measurements in atrial and ventricular murine myocytes isolated as described above are provided.

Isolation of High Quality Murine Atrial and Ventricular Myocytes for Simultaneous Measurements of Ca2+ Transients and L-Type Calcium Current

Mouse models allow studying key mechanisms of arrhythmogenesis. For this purpose, high quality cardiomyocytes are necessary to perform patch-clamp measurements. Here, a method to isolate murine atrial and ventricular myocytes via retrograde enzyme-based Langendorff perfusion, which allows simultaneous measurements of calcium-transients and L-type calcium current, is described.

Mouse models play a crucial role in arrhythmia research and allow studying key mechanisms of arrhythmogenesis including altered ion channel function and ...

Immunofluorescent Labeling of Plant Virus and Insect Vector Proteins in Hemipteran Guts

Most plant viruses in nature are transmitted from one plant to another by hemipteran insects. A high population density of the vector insects that are highly efficient at virus transmission plays a key role in virus epidemics in fields. Studying virus-insect vector interactions can advance our understanding of virus transmission and epidemics with the aim of designing novel strategies to control plant viruses and their vector insects. Immunofluorescence labeling has been widely used to analyze interactions between pathogens and hosts and is used here in the white-backed planthopper (WBPH, Sogatella furcifera), which efficiently transmits the southern rice black streaked dwarf virus (SRBSDV, genus Fijivirus, family Reoviridae), to locate the virions and insect proteins in the midgut epithelial cells. Using laser scanning confocal microscopy, we studied the morphological characteristics of midgut epithelial cells, cellular localization of insect proteins, and the colocalization of virions and an insect protein. This protocol can be used to study virus activities in insects, functions of insect proteins, and interactions between virus and vector insect.

This protocol for immunofluorescent labeling of both plant virus proteins and vector insect proteins in excised insect guts can be used to study interactions among virus and vector insects, insect protein functions and molecular mechanisms underlying virus transmission.

Most plant viruses in nature are transmitted from one plant to another by hemipteran insects. A high population density of the vector insects that are ...

Comparison of Methods for Isolating Entomopathogenic Fungi from Soil Samples

The goal of the present study is to compare the effectiveness of using insect baits versus artificial selective medium for isolating entomopathogenic fungi (EPF) from soil samples. The soil is a rich habitat for microorganisms, including EPF particularly belonging to the genera Metarhizium and Beauveria, which can regulate arthropod pests. Biological products based on fungi are available in the market mainly for agricultural arthropod pest control. Nevertheless, despite the high endemic biodiversity, only a few strains are used in commercial bioproducts worldwide. In the present study, 524 soil samples were cultured on potato dextrose agar enriched with yeast extract supplemented with chloramphenicol, thiabendazole, and cycloheximide (CTC medium). The growth of fungal colonies was observed for 3 weeks. All Metarhizium and Beauveria EPF were morphologically identified at the genus level. Additionally, some isolates were molecularly identified at the species level. Twenty-four out of these 524 soil samples were also surveyed for EPF occurrence using the insect bait method (Galleria mellonella and Tenebrio molitor). A total of 51 EPF strains were isolated (41 Metarhizium spp. and 10 Beauveria spp.) from the 524 soil samples. All fungal strains were isolated either from croplands or grasslands. Of the 24 samples selected for comparison, 91.7% were positive for EPF using Galleria bait, 62.5% using Tenebrio bait, and 41.7% using CTC. Our results suggested that using insect baits to isolate the EPF from the soil is more efficient than using the CTC medium. The comparison of isolation methods in addition to the identification and conservation of EPF has a positive impact on the knowledge about biodiversity. The improvement of EPF collection supports scientific development and technological innovation.

Entomopathogenic fungal colonies are isolated from tropical soil samples using Tenebrio bait, Galleria bait, as well as selective artificial medium, i.e., potato dextrose agar enriched with yeast extract supplemented with chloramphenicol, thiabendazole, and cycloheximide (CTC medium).

The goal of the present study is to compare the effectiveness of using insect baits versus artificial selective medium for isolating entomopathogenic ...

Exploring Entomopathogenic Fungi Resources from Forest Wood Borers

Isolation, Behavioral Identification, and Pathogenicity Assessment of Entomopathogenic Fungi from a Forest Wood Borer

Forest wood borers (FWB) cause severe tree damage and economic losses worldwide. The release of entomopathogenic fungi (EPF) during the FWB emergence period is considered an acceptable alternative to chemical control. However, EPF resources have been significantly less explored for FWBs, in contrast to agricultural insect pests. This paper presents a protocol for exploring EPF resources from FWBs using wild Monochamus alternatus populations as an example. In this protocol, the assignment of traps baited with M. alternatus attractants to different populations guaranteed the collection of adequate samples with natural infection symptoms, during the emergence periods of the beetle. Following finely dissecting integuments and placing them onto a selective medium, fungal species were isolated from each part of beetle bodies and identified based on both molecular and morphological traits.
Several fungal species were certified as parasitic EPFs via re-infection of healthy M. alternatus with spore suspensions. Their behavioral phenotypes on M. alternatus were observed using scanning electron microscopy and further compared with those on the Coleopteran model insect Tribolium castaneum. For EPFs that present consistent parasitism phenotypes on both beetle species, evaluation of their activities on T. castaneum provided valuable information on lethality for future study on M. alternatus. This protocol helped the discovery of EPF newly reported on M. alternatus populations in China, which could be applied as an efficient approach to explore more EPF resources from other FWBs.

Author Spotlight: Evaluation of Entomopathogenic Fungi in Wild Monochamus alternatus Populations for Biocontrol Applications in Forest Wood Borers

Here we present a protocol for obtaining entomopathogenic fungi from a forest wood borer and a substitutive way to evaluate their entomopathogenic activities using a Coleopteran model insect. This method is efficient and convenient for exploring entomopathogenic fungal resources from wood-boring insect pests in natural forests.

Forest wood borers (FWB) cause severe tree damage and economic losses worldwide. The release of entomopathogenic fungi (EPF) during the FWB emergence ...

Isolation and Selection of Entomopathogenic Fungi from Soil Samples and Evaluation of Fungal Virulence against Insect Pests

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