The authors would like to thank Dr. Sheryl Coutermarsh-Ott, Dylan McDaniel and Bettina Heid for technical discussions. The authors thank Dr. Nanda Nanthakumar for providing the Caco-2 cells. The authors also thank The Multicultural Academic Opportunities Program (MAOP) at Virginia Tech. This work was supported by the National Institute of Diabetes and Digestive and Kidney Diseases Award K01DK092355 (to I.C.A.). The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.

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The authors declare that they have no competing financial interests.

장 organoids의 문화 및 유지 보수 적절한 조직 배양 기술로 개별 마스터 할 수있는 절차입니다. 이보다 기존의 단일 층의 세포 성장에 비해 계대에 미묘한가 있지만, 이러한 미묘한 차이는 극복하기 어려운되지 않습니다. 이 방법의 중요한 단계는 최적의 파종을 위해 충분히 높은 밀도로 organoids 성장을 할 수있는 포함한다. 통상적으로 세포주를 달성 할 수있다 큰 파종 밀도가 실질적으로없는 실험 organoids으로 축소되어야한다. 여러 처치 군이 존재하는 경우에 특히 분명해진다. 이 프로토콜은 다양한 박테리아의 다양한 장내 상피 호스트 병원체 상호 작용을 연구하는 단계별 방식을 제공하기위한 것이다 정규화에 대해이 시스템을 사용하여 바이러스, 진균 병원체뿐만 아니라 어드레스 어려움. 보고서는 describ 사용할 수 있습니다전자 세균성 병원체 살모넬라 균과 장 organoids의 상호 작용, 아직 분비되는 사이토 카인 (13)을 측정 할 때 정규화 방법을 제시하지 않습니다. 다른 방법으로 organoid 문화를 정상화 할 때 발생하는 여러 가지 문제가 있습니다. bicinchoninic 산 분석을 통해 분비 단백질을 정규화 (BCA)는 옵션입니다; 그러나, 성장 성분 organoid 배양에 필요한 (N2 및 / 또는 비타민 B27)이 BCA 분석을 방해 (데이터는 도시하지 않음)을 정규화를 세포 생존력을 통해 이러한 변형 MTT 분석 14에 설명되어있다.; 그러나, MTT으로이 기술을 통해 정상화를위한 부정확 한 방법을 소개합니다 organoids의 미토콘드리아 대사 활동을 변경하는 처리는 미토콘드리아 탈수소 효소 (15)의 작용에 의해 감소를 기반으로합니다. 안, 미디어에서 N- 아세틸 시스테인 (NAC)를 제거 할 필요가있다MTT 법을 통해 정규화 원하는 경우 LY는하지만, NAC와 같은 박테리아 병원체로 처리하는 것은 박테리아의 성장을 억제 (16) 할 수있는 경우. 이 기술의 장점 organoids 사이토 카인 분비 단백질 제품은 지금 카코 -2 세포를 표준 곡선에 대해 정규화 될 수있다. 이 기술의 한계는 비 형질 전환 주 organoids 상피의 핵 염색이 대장 암 세포주의 핵 염색에 대해 정규화 때문에 정규화 상관이라고한다. 저자는 핵 메탄올 및 염색 핵으로 고정 찾기 염료를 염색하는 카코 -2 세포를 표준 곡선에 대한 효과적인 표준화 기술이다. 이 대장 암 세포주의 성장 특성을 정확하게 핵 염색을 이용하여 평균 형광 강도를 측정 장내 organoids의 성장 특성을 모방하지 않지만 전체 세포 수에 대해 정상화 좋은 전략이다. <p c아가씨 = &quot;jove_content은&quot;&gt; 여기에 설명 된 기술은이 모델 시스템을 이용하여 정확한 해석을위한 필수적인 적절한 정규화와 호스트 병원균 작용을 모방하기위한 좋은 출발점을 제공 종합적. 다른 방법에 대해 이러한 기술의 중요성은 분비 된 단백질 중 어느 평가를 수행 할 때 적절한 정규화는 ELISA 분석법을 기반으로 수행되어야한다는 것이다.

능력은 수확과 문화 차 organoids 조직 생물학 1-5에 대한보다 생리 학적으로 대표 현상을 이해하는 데 밀접한 흥미로운 발전 소장, 대장, 췌장, 간, 뇌에 대해 설명하고 있습니다되었습니다. 소장 organoids의 문화 및 유지 보수를 설명하는 첫 번째 방법은 사토 등의 알에 의해보고되었다. 한스 Clevers 1의 실험실에서. 이 방법, 수확 및 입증 차 장 상피 세포의 배양에 앞서 제한 상피 세포 성장 유지에 효과가있다. 방법은 궁극적으로 혼합 차 섬유 아세포 (6)의 부산물로 이어질 것 같은 콜라게나 제와 디스 파제 등의 효소와 함께 배양을 통해 조직의 분리를 포함했다. 이러한 조건은 또한 시간은 상피 세포 배양을 지속 제한 될 것이다. 상피 세포로 인해 세포 사멸을 입력으로 더 상피 세포 틈새에 최소가 형성 것적절한 성장 인자 또는 접촉 무결성 손실의 부족 anokis 7 불린다. 입체 · organoid 배양 시스템의 출현은 지속적인 배양 한 장내 세포 유형의 스펙트럼을 포함하는 일차 배양 장 세포에 대한 방법을 제공했다. 이러한 상피 organoids들은 여러 분화 세포로 구성되어 있음되는 세포주에 비해 많은 장점을 가지고, 그들이보다 생체 8로부터 유도 된 기관을 모방. 과정은 결국 다른 자극 하에서 장내 상피 세포의 반응을 평가하기위한 가치있는 도구임이 입증되었다 &quot;접시 미니 창자 성장&quot;한다. 이러한 고분자 패턴은 호스트와 미생물 9 모두에서 다양한 반응을 조절할 수있는 미생물 병원체 관련 분자 패턴 (PAMPs가)와 기본 장 세포의 상호 작용을 조사하는 면역학 분야에 적합하다. 뿐만 아니라 연구자들은 이제 마우스 organoids 이러한 상호 작용을 탐구하지만, 수물론이 같은 사람에서 배양 할 수있다. 이 기술은 극적 맞춤 의약품을 변경할 가능성을 가지고 있으며,이 기술은 가까운 미래에 가능하게하는 것으로 추측 발전 유혹된다. 이 방법의 전체 목표는 다양한 자극과 함께 배양 확장을위한 프로토콜 및 장내 organoids의 치료를 제공하는 것이다. 이러한 자극은 백신, 세균 PAMPs가, 살아있는 병원균, 위장관 (GI) 및 암 치료제에서 궁극적으로 범위 수 있습니다. 마우스 장 organoids의 분리 및 배양 사토 등의 알에서 적응하고있다.이 프로토콜을 다음과 같은 경우, 최종 제품은 문화 organoid되는 것은 여전히 달성 원래의 방법에서 약간의 편차가 있지만. 이 방법은 세포, N에 기초하여 분석을 수행 할 때 고려되어야 비 균일 한 셀 구조, 작업시 적절한 정규화를위한 적절한 기술을 설명하기에 집중엄버.

<table>
	<tbody>
		<tr>
			<td>Fetal Bovine Serum (FBS)</td>
			<td>Atlanta Biologicals</td>
			<td>S11050</td>
			<td>(Section 1,3,6) Or equivalent brand</td>
		</tr>
		<tr>
			<td>Sorvall Legend XTR Centrifuge</td>
			<td>Thermo</td>
			<td></td>
			<td>(Section 1,3)</td>
		</tr>
		<tr>
			<td>DMEM</td>
			<td>GE Healthcare</td>
			<td>Sh30243.01</td>
			<td>(Section 1,6) For Caco-2 and HEK293 Rspondin1 cells</td>
		</tr>
		<tr>
			<td>HEK293T-Rspondin1 secreting cell line</td>
			<td></td>
			<td></td>
			<td>(Section 1) Described and modified from Kim, K.A. et al. Lentiviral particles contained RSPO1(NM_138683) ORF cDNA cloned into a pReceiver-Lv105 backbone custom ordered and purchased from GeneCopoeia.&#160;</td>
		</tr>
		<tr>
			<td>50 ml conical tube</td>
			<td>Falcon</td>
			<td>352070</td>
			<td>(Section 1) Or equivalent brand</td>
		</tr>
		<tr>
			<td>T-175 Flask</td>
			<td>Corning</td>
			<td>431079</td>
			<td>(Section 1) Or equivalent brand&#160;</td>
		</tr>
		<tr>
			<td>Protein Matrix</td>
			<td>Corning</td>
			<td>356231</td>
			<td>(Section 2,3,4,5,6) Matrigel Growth Factor Reduced&#160;</td>
		</tr>
		<tr>
			<td>HyClone Dulbecco&#39;s (DPBS)</td>
			<td>GE Healthcare</td>
			<td>SH30264.01</td>
			<td>(Section 2,3)</td>
		</tr>
		<tr>
			<td>DMEM/F12&#160;</td>
			<td>Life Technologies</td>
			<td>12634-010</td>
			<td>(Section 2,3) Advanced DMEM/F12</td>
		</tr>
		<tr>
			<td>Corning 24 Well TC Plates</td>
			<td>Corning</td>
			<td>3524</td>
			<td>(Section 2)</td>
		</tr>
		<tr>
			<td>N2 Supplement 100x&#160;</td>
			<td>Life Technologies</td>
			<td>17502-048</td>
			<td>(Section 2)</td>
		</tr>
		<tr>
			<td>B27 without vitamin A 50x&#160;</td>
			<td>Life Technologies</td>
			<td>12587-010&#160;</td>
			<td>(Section 2)</td>
		</tr>
		<tr>
			<td>Trizol</td>
			<td>Life Technologies</td>
			<td>15596-026</td>
			<td>(Section 2)</td>
		</tr>
		<tr>
			<td>Glutamine Supplement (Glutamax)</td>
			<td>Life Technologies</td>
			<td>35050-061</td>
			<td>(Section 2) Can Combine with Advanced DMEM/ F12</td>
		</tr>
		<tr>
			<td>HEPES (1 M)</td>
			<td>Life Technologies</td>
			<td>15630-080</td>
			<td>(Section 2) Can Combine with Advanced DMEM/ F12&#160;</td>
		</tr>
		<tr>
			<td>10ml Serological Pipet</td>
			<td>Falcon</td>
			<td>357551</td>
			<td>(Section 2) Or equivalent brand</td>
		</tr>
		<tr>
			<td>Murine Noggin</td>
			<td>Peprotech</td>
			<td>250-38</td>
			<td>(Section 2) Stock = 100 mg/ml</td>
		</tr>
		<tr>
			<td>N-Acetyl-L-cysteine</td>
			<td>Sigma-Aldrich</td>
			<td>A9165</td>
			<td>(Section 2) Stock = 1M</td>
		</tr>
		<tr>
			<td>Recombinant Mouse EGF</td>
			<td>Biolegend</td>
			<td>585608</td>
			<td>(Section 2) Stock = 500 mg/ml</td>
		</tr>
		<tr>
			<td>Rocker Variable</td>
			<td>Bioexpres</td>
			<td></td>
			<td>(Section 3)</td>
		</tr>
		<tr>
			<td>dissecting scissors</td>
			<td></td>
			<td></td>
			<td>(Section 3)</td>
		</tr>
		<tr>
			<td>forceps</td>
			<td></td>
			<td></td>
			<td>(Section 3)</td>
		</tr>
		<tr>
			<td>glass slides</td>
			<td></td>
			<td></td>
			<td>(Section 3)</td>
		</tr>
		<tr>
			<td>dissecting tweezers</td>
			<td></td>
			<td></td>
			<td>(Section 3)</td>
		</tr>
		<tr>
			<td>25 ml Serological Pipet</td>
			<td>Falcon</td>
			<td></td>
			<td>(Section 3)</td>
		</tr>
		<tr>
			<td>EDTA&#160;</td>
			<td>Sigma-Aldrich</td>
			<td>SLBB9821</td>
			<td>(Section 3) 0.5M or alternative TC grade EDTA</td>
		</tr>
		<tr>
			<td>Sterile Petri Dish 100mm x 15mm</td>
			<td>Fisher</td>
			<td>FB0875712</td>
			<td>(Section 3) Or equal sized TC dish</td>
		</tr>
		<tr>
			<td>1ml Syringe</td>
			<td>Becton Dickinson</td>
			<td>309659</td>
			<td>(Section 4)</td>
		</tr>
		<tr>
			<td>Precision Glide Needle</td>
			<td>Becton Dickinson</td>
			<td>305120</td>
			<td>(Section 4) 23G x 1 1/4 (0.6mm x 30mm)</td>
		</tr>
		<tr>
			<td>Flagellin from Bacillus subtilis</td>
			<td>Invivogen</td>
			<td>tlrl-bsfla&#160;</td>
			<td>(Section 5,6)</td>
		</tr>
		<tr>
			<td>Listeria monocytogenes</td>
			<td>ATCC</td>
			<td>19115</td>
			<td>(Section 5,6)&#160;(Murray&#160;et&#160;al.)&#160;</td>
		</tr>
		<tr>
			<td>Hemocytometer</td>
			<td>Sigma-Aldrich</td>
			<td>Z359629-1EA</td>
			<td>(Section 5,6)Or equivalent brand</td>
		</tr>
		<tr>
			<td>BBL Brain Heart Infusion Agar</td>
			<td>Becton Dickinson</td>
			<td>211065</td>
			<td>(Section 5)</td>
		</tr>
		<tr>
			<td>Bacto Brain Heart Infusion</td>
			<td>Becton Dickinson</td>
			<td>237500</td>
			<td>(Section 5)</td>
		</tr>
		<tr>
			<td>Caco-2</td>
			<td>ATCC</td>
			<td>HTB-37</td>
			<td>(Section 6)</td>
		</tr>
		<tr>
			<td>Trypsin&#160;</td>
			<td>gibco</td>
			<td>25200056</td>
			<td>(section 6)</td>
		</tr>
		<tr>
			<td>Methanol</td>
			<td>Fisher</td>
			<td>A412-4</td>
			<td>(Section 6)</td>
		</tr>
		<tr>
			<td>SpectraMax M5</td>
			<td>Molecuar Devices</td>
			<td></td>
			<td>(Section 6)</td>
		</tr>
		<tr>
			<td>96 Well Assay Plate</td>
			<td>Corning</td>
			<td>3603</td>
			<td>(Section 6) Black Plate, Clear Bottom TC treated</td>
		</tr>
		<tr>
			<td>Nuclear Staining Dye</td>
			<td>Life Technologies</td>
			<td>H1399</td>
			<td>(section 6) Hoechst 33342</td>
		</tr>
		<tr>
			<td>T-75 Flask</td>
			<td>Corning</td>
			<td>430641</td>
			<td>(Section 6) Or equivalent brand</td>
		</tr>
		<tr>
			<td>15 ml conical tube</td>
			<td>Falcon</td>
			<td>352096</td>
			<td>(Section1,3) Or equivalent brand</td>
		</tr>
		<tr>
			<td>1.7 ml polypropylene tube</td>
			<td>Bioexpress</td>
			<td>C-3262-1</td>
			<td>Or equivalent brand</td>
		</tr>
		<tr>
			<td>Quick-RNA MiniPrep</td>
			<td>Zymo Research</td>
			<td>R1054</td>
			<td>Or equivalent brand</td>
		</tr>
		<tr>
			<td>TNF-alpha&#160;</td>
			<td>Applied Biosystems</td>
			<td>Mm 00443260_g1</td>
			<td>Taqman gene expression assay kit</td>
		</tr>
		<tr>
			<td>IL-6&#160;</td>
			<td>Applied Biosystems</td>
			<td>(Mm 00446190_m1</td>
			<td>Taqman gene expression assay kit</td>
		</tr>
		<tr>
			<td>IL-1beta</td>
			<td>Applied Biosystems</td>
			<td>Mm 00434228_m1</td>
			<td>Taqman gene expression assay kit</td>
		</tr>
		<tr>
			<td>IL-18</td>
			<td>Applied Biosystems</td>
			<td>Mm 00434225_m1</td>
			<td>Taqman gene expression assay kit</td>
		</tr>
		<tr>
			<td>18s</td>
			<td>Applied Biosystems</td>
			<td>Hs 99999901_s1</td>
			<td>Taqman gene expression assay kit</td>
		</tr>
		<tr>
			<td>7500 Fast Real Time PCR System</td>
			<td>Applied Biosystems</td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Nexus gradient Mastercycler</td>
			<td>Eppendorf</td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>TaqMan Fast Universal PCR Master Mix</td>
			<td>Life Technologies</td>
			<td>4352042</td>
			<td></td>
		</tr>
		<tr>
			<td>High Capacity cDNA Reverse Transcription Kit</td>
			<td>Life Technologies/Applied Biosystems</td>
			<td>4368814</td>
			<td></td>
		</tr>
		<tr>
			<td>Fast Optical 96-Well Reaction Plate, 0.1 mL</td>
			<td>Life Technologies/Applied Biosystems</td>
			<td>4346907</td>
			<td></td>
		</tr>
		<tr>
			<td>Recombinant Mouse R-Spondin 1 Protein</td>
			<td>R&#38;D Systems</td>
			<td>3474-RS-050</td>
			<td>500 ng/ml</td>
		</tr>
		<tr>
			<td>chloroform</td>
			<td>Sigma-Aldrich</td>
			<td>C7559</td>
			<td></td>
		</tr>
	</tbody>
</table>

the ex vivo culture and pattern recognition receptor stimulation of mouse intestinal organoids

기본 장 organoids 크게 점막 면역학 분야에 영향을 미칠 수있는 유용한 모델 시스템이다. 그러나, organoid 성장 특성의 복잡성은 연구자에 대한 상당한주의를 실시하고 있습니다. 특히, 각각의 organoid의 성장 패턴은 매우 다양하며, 문화 상피 세포의 이종 인구를 만듭니다. 이러한주의 사항과 함께, 일반 조직 배양 방법은 단순히 의한 세포 구조의 복잡성으로 organoid 시스템에 적용 할 수 없다. 일부 정규화 기술을 적용하지 않는 계산 및 세포주 개별적으로 분리 된 셀에 대해 공통 셀 번호만을 기준 도금 organoids위한 신뢰할 수있는 방법이 아니다. 총 단백질 함량 정규화 때문에 거주자 단백질 매트릭스 복합체 이루어진다. 분비 된 콘을 평가할 때 세포 수, 형상 및 세포 형태 측면에서 이러한 특성은 고려되어야organoid 질량에서 텐트. 이 프로토콜은 문화 간단한 절차를 간략하게 설명하고 미생물 병원체 및 병원체 관련 분자 패턴 (PAMPs가)에 소장 organoids을 치료하기 위해 생성되었습니다. 또한 단백질 분석은 이러한 공격 후 수행 할 때 적용해야 정규화 기술을 강조한다.

장 organoids을 육성하기 위해이 프로토콜을 다음과 같은 경우, 특성 구 모양의 organoids는 수확 후 존재합니다. R-spondin1 에어컨 미디어의 추가는 매일 organoids의 성장과 신진를 시작합니다. organoids의 성장은도 1a에 도시되어있다 - F, 및 일 1, 2, 4, 5, 6 일에 장내 organoids 대표 인 14도 1F는 14 일째 organoids의 비 균일 한 성장 특성을 나타낸다. organoids는 적절한 수의 성장되면, 그들은 플레이 팅과 다양한 PAMPs가 및 / 또는 미생물에 도전 할 수있다. 발현 분석은 표준 기술을 통해 수행 될 수있다. 이는 다음 분석 하였다 염증성 사이토 카인 IL-18, IL-6, TNFα의 mRNA 발현을 도시하는도 2A-C에 나타내열을 organoids의 24 시간의 문제는 L. 사망 모노 사이토와 PAMP의 플라 젤린. mRNA의 발현을 평가하기위한 이론적 근거는, IL-18 사이토 카인 IL-6 및 TNFα 이러한 병원성 챌린지에 응답하여 상피 세포에 의해 변조되는 좋은 후보라고이고,이 염증​​성 사이토 카인의 조절은이 기술의 효과를 보여주는 것이다. 도 3a는 - C는 상주 단백질 매트릭스 파편의 최소한의 배경 염색과 고정 다음 핵 염색 염료와 장 organoids의 상대적 핵 염색을 보여줍니다. 고정 및 염색하는이 방법은 각 웰에있는 세포 수를 상이한 차지할 분석법을 표준화에 적용될 수있다. 단백질 매트릭스에 도금 카코이 세포의 시리얼 희석의 표준 곡선을 생성 할 때, 다음 고정 핵 염색을 그림 4에서 알 수있다염색 염료. 0.89의 R이 값은 세포 수 사이의 선형 관계를 나타내고, 형광 세기를 의미하고, 상기 선형 방정식은 셀 번호 organoids를 정규화하는데 사용될 수있다. 도 4에 도시 된 표준 곡선 웰 당 30,000 세포 넘어 포화 한도에 도달하기 시작한다. 웰 당 30,000 세포를 상기 세포의 적정 핵 염색 염료의 포화 영역을 포함하는도 4에 도시되었다. 정규화 향상된 정확도가 포화 한도에 도달하기 전에 핵 염색 염료의 선형 범위를 반영하는 셀 번호를 획득한다. <img alt="그림 1" src="/files/ftp_upload/54033/54033fig1.jpg" /> 그림 1 :. 격리 다음 쥐의 소장 파생 organoids 성장의 소장 Organoid 성장 시간 코스. (A) 주 1 (B)의 날 (2) (C) 일 4. (D)의 날 (5) (E)의 날 (14) 이미지가 각각의 주어진 일에 대한 organoid 성장의 대표 6. (F)의 날. 스케일 바는 1,000 ㎛ 내지 200 ㎛의 동일, B, C, D, 및 E. 스케일 막대는 A, B, C, D, 및 E. 스케일 바 적합한 화상 100 μm의 동일한위한 왼쪽 이미지 200㎛ 인 동일 F에 대한 왼쪽과 오른쪽 이미지를 각각. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/54033/54033fig1large.jpg" target="_blank">이 그림의 더 큰 버전을 보려면 여기를 클릭하십시오.</a> <img alt="그림 2" src="/files/ftp_upload/54033/54033fig2.jpg" /> 그림 2 : 24 시간 PAMP의 반칙으로 염증성 사이토 카인의 mRNA의 발현 PAMPs가 열 살해 리스테리아 균 24 시간 동안 도전 야생형 장 organoids의 상대 mRNA 발현 (A - C)의 I의 대표 배 변경..<html> 각각 nflammatory 사이토 카인 IL-18, IL-6 및 TNFα. 오차 막대는 표준 편차 (SD) 표현 <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/54033/54033fig2large.jpg" target="_blank">이 그림의 더 큰 버전을 보려면 여기를 클릭하세요.</a> <img alt="그림 3" src="/files/ftp_upload/54033/54033fig3.jpg" /> 그림 3 : 정규화에 대한 Organoids의 상대 형광 염색 고정을 다음과 organoids의 핵 염색.. (A) organoids의 밝은 필드. (B) 핵 염색 염료와 organoids의 형광 염색. (C) 밝은 필드 및 형광 염색의 병합 된 이미지입니다. 스케일 바는 모든 이미지에 400 μm의 동일. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/54033/54033fig3large.jpg" target="_blank">이 그림의 더 큰 버전을 보려면 여기를 클릭하십시오.</a> &quot;&gt; <img alt="그림 4" src="/files/ftp_upload/54033/54033fig4.jpg" /> 그림 4 : 카코 2 세포에서 생성 된 표준 곡선 세중의 우물에서 생성 된 표준 곡선.. 셀 시드가 아니라 당 2,500 세포에 이르기까지 희석 잘 당 60,000 세포에서 시작 범위를했다. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/54033/54033fig4large.jpg" target="_blank">이 그림의 더 큰 버전을 보려면 여기를 클릭하십시오.</a> <img alt="그림 5" src="/files/ftp_upload/54033/54033fig5.jpg" /> 그림 5 :. 프로토콜 다이어그램 개요 그림 1 탑 패널은 R-spondin1 에어컨 미디어를 수확 보여줍니다. 그림 2 - 중간 패널 수확하는 프로토콜과 문화 마우스 소장 organoids의 측면을 보여줍니다. 그림의 3 하단 패널을 보여줍니다 (A) 십사일 배양 organoids의 도금. PAMPs가 / L.와 (B)의 도전모노 사이토 겐 및 이탈 점유 웰 표준 곡선을 생성한다. (C)를 ​​PAMP 도전에 따라, 이전에 점유 웰 카코 -2 세포 도금 표준 곡선을 생성한다. 고정 및 핵 염색 염료를 첨가 한 다음에 (D), 표준 곡선에 대한 우물과 정상화의 여기 / 방출을 측정. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/54033/54033fig5large.jpg" target="_blank">이 그림의 더 큰 버전을 보려면 여기를 클릭하십시오.</a>

Watch this Scientific Journal Video about The Ex Vivo Culture and Pattern Recognition Receptor Stimulation of Mouse Intestinal Organoids at JoVE.com

The Ex Vivo Culture and Pattern Recognition Receptor Stimulation of Mouse Intestinal Organoids

여기서, 수확 유지하고, 병원체 관련 분자 패턴 (PAMPs가) 및 리스테리아 마우스 소장 organoids을 치료하는 프로토콜뿐만 아니라, 유전자 발현 및 단백질 적절한 정규화 기술에 중점으로 설명한다.

그만큼<em&gt; 전의 VIVO</em마우스 소장 Organoids의&gt; 문화 및 패턴 인식 수용체 자극

Primary intestinal organoids are a valuable model system that has the potential to significantly impact the field of mucosal immunology. However, the ...

the-ex-vivo-culture-pattern-recognition-receptor-stimulation-mouse

Nanyang Technological University

Research

JoVE Journal

Immunology and Infection

The Ex Vivo Culture and Pattern Recognition Receptor Stimulation of Mouse Intestinal Organoids

13.5K 조회수.  Virginia Maryland College of Veterinary Medicine, Virginia Tech.  여기서, 수확 유지하고, 병원체 관련 분자 패턴 (PAMPs가) 및 리스테리아 마우스 소장 organoids을 치료하는 프로토콜뿐만 아니라, 유전자 발현 및 단백질 적절한 정규화 기술에 중점으로 설명한다. 

비디오: The Ex Vivo Culture and Pattern Recognition Receptor Stimulation of Mouse Intestinal Organoids

Assessing the Innate Sensing of HIV-1 Infected CD4+ T Cells by Plasmacytoid Dendritic Cells Using an Ex vivo Co-culture System.

HIV-1 innate sensing requires direct contact of infected CD4+ T cells with plasmacytoid dendritic cells (pDCs). In order to study this process, the protocols described here use freshly isolated human peripheral blood mononuclear cells (PBMCs) or plasmacytoid dendritic cells (pDCs) to sense infections in either T cell line (MT4) or heterologous primary CD4+ T cells. In order to ensure proper sensing, it is essential that PBMC are isolated immediately after blood collection and that optimal percentage of infected T cells are used. Furthermore, multi-parametric flow cytometric staining can be used to confirm that PBMC samples contain the different cell lineages at physiological ratios. A number of controls can also be included to evaluate viability and functionality of pDCs. These include, the presence of specific surface markers, assessing cellular responses to known agonist of Toll-Like Receptors (TLR) pathways, and confirming a lack of spontaneous type-I interferon (IFN) production. In this system, freshly isolated PBMCs or pDCs are co-cultured with HIV-1 infected cells in 96 well plates for 18-22 hr. Supernatants from these co-cultures are then used to determine the levels of bioactive type-I IFNs by monitoring the activation of the ISGF3 pathway in HEK-Blue IFN-&#945;/&#946; cells. Prior and during co-culture conditions, target cells can be subjected to flow cytometric analysis to determine a number of parameters, including the percentage of infected cells, levels of specific surface markers, and differential killing of infected cells. Although, these protocols were initially developed to follow type-I IFN production, they could potentially be used to study other imuno-modulatory molecules released from pDCs and to gain further insight into the molecular mechanisms governing HIV-1 innate sensing.

Assessing the Innate Sensing of HIV-1 Infected CD4+ T Cells by Plasmacytoid Dendritic Cells Using an Ex vivo Co-culture System.

Unlike cell-free HIV-1 particles, infected CD4+ T cells are effectively sensed by plasmacytoid dendritic cells (pDCs). This manuscript describes a method where peripheral blood mononuclear cells (PBMCs) or isolated pDCs are co-cultured with HIV-1 infected T cells to evaluate innate sensing by pDCs as assessed by release of type-I IFN.

HIV-1 감염 CD4의 타고난 감지 평가<sup&gt; +</sup&gt;를 사용하여 형질 수지상 세포에 의한 T 세포<em&gt; 예 생체 내</em&gt; 공동 문화 시스템.

HIV-1 innate sensing requires direct contact of infected CD4+ T cells with plasmacytoid dendritic cells (pDCs). In order to study this process, the ...

연구

면역학 및 감염병학

Monitoring Activation of the Antiviral Pattern Recognition Receptors RIG-I And PKR By Limited Protease Digestion and Native PAGE

Host defenses to virus infection are dependent on a rapid detection by pattern recognition receptors (PRRs) of the innate immune system. In the cytoplasm, the PRRs RIG-I and PKR bind to specific viral RNA ligands. This first mediates conformational switching and oligomerization, and then enables activation of an antiviral interferon response. While methods to measure antiviral host gene expression are well established, methods to directly monitor the activation states of RIG-I and PKR are only partially and less well established.
Here, we describe two methods to monitor RIG-I and PKR stimulation upon infection with an established interferon inducer, the Rift Valley fever virus mutant clone 13 (Cl 13). Limited trypsin digestion allows to analyze alterations in protease sensitivity, indicating conformational changes of the PRRs. Trypsin digestion of lysates from mock infected cells results in a rapid degradation of RIG-I and PKR, whereas Cl 13 infection leads to the emergence of a protease-resistant RIG-I fragment. Also PKR shows a virus-induced partial resistance to trypsin digestion, which coincides with its hallmark phosphorylation at Thr 446. The formation of RIG-I and PKR oligomers was validated by native polyacrylamide gel electrophoresis (PAGE). Upon infection, there is a strong accumulation of RIG-I and PKR oligomeric complexes, whereas these proteins remained as monomers in mock infected samples.
Limited protease digestion and native PAGE, both coupled to western blot analysis, allow a sensitive and direct measurement of two diverse steps of RIG-I and PKR activation. These techniques are relatively easy and quick to perform and do not require expensive equipment.

Innate defenses to virus infections are triggered by pattern recognition receptors (PRRs). The two cytoplasmic PRRs RIG-I and PKR bind to viral signature RNAs, change conformation, oligomerize, and activate antiviral signaling. Methods are described which allow to conveniently monitor the conformational switching and the oligomerization of these cytoplasmic PRRs.

항 바이러스 패턴 인식 수용체 RIG-I와 PKR에 의해 제한 프로테아제 소화 및 기본 페이지의 모니터링 활성화

Host defenses to virus infection are dependent on a rapid detection by pattern recognition receptors (PRRs) of the innate immune system. In the cytoplasm, ...

Lymphocyte Isolation from Human Skin for Phenotypic Analysis and Ex Vivo Cell Culture

Human skin has an important barrier function and contains various immune cells that contribute to tissue homeostasis and protection from pathogens. As the skin is relatively easy to access, it provides an ideal platform to study peripheral immune regulatory mechanisms. Immune resident cells in healthy skin conduct immunosurveillance, but also play an important role in the development of inflammatory skin disorders, such as psoriasis. Despite emerging insights, our understanding of the biology underlying various inflammatory skin diseases is still limited. There is a need for good quality (single) cell populations isolated from biopsied skin samples. So far, isolation procedures have been seriously hampered by a lack of obtaining a sufficient number of viable cells. Isolation and subsequent analysis have also been affected by the loss of immune cell lineage markers, due to the mechanical and chemical stress caused by the current dissociation procedures to obtain single cell suspension. Here, we describe a modified method to isolate T cells from both healthy and involved psoriatic human skin by combining mechanical skin dissociation using an automated tissue dissociator and collagenase treatment. This methodology preserves expression of most immune lineage markers such as CD4, CD8, Foxp3 and CD11c upon the preparation of single cell suspensions. Examples of successful CD4+ T cell isolation and subsequent phenotypic and functional analysis are shown.

Lymphocyte Isolation from Human Skin for Phenotypic Analysis and Ex Vivo Cell Culture

We describe a protocol to efficiently isolate skin resident T cells from human skin biopsies. This protocol yields sufficient numbers of viable human skin resident lymphocytes for flow cytometric analysis and ex vivo culture.

표현형 분석 및 대한 인간의 피부에서 림프구 분리<em&gt; 전의 VIVO</em&gt; 세포 배양

Human skin has an important barrier function and contains various immune cells that contribute to tissue homeostasis and protection from pathogens. As the ...

Organoids as Model for Infectious Diseases: Culture of Human and Murine Stomach Organoids and Microinjection of Helicobacter Pylori

Recently infection biologists have employed stem cell derived cultures to answer the need for new and better models to study host-pathogen interactions. Three cellular sources have been used: Embryonic stem cells (ESC), induced pluripotent stem cells (iPSC) or adult stem cells. Here, culture of mouse and human gastric organoids derived from adult stem cells is described and used for infection with the gastric pathogen Helicobacter pylori. Human gastric glands are isolated from resection material, seeded in a basement matrix and embedded in medium containing growth factors epidermal growth factor (EGF), R-spondin, Noggin, Wnt, fibroblast growth factor (FGF) 10, gastrin and transforming growth factor (TGF) beta inhibitor. In these conditions, gastric glands grow into 3-dimensional organoids containing 4 lineages of the stomach. The organoids expand indefinitely and can be frozen and thawed similarly as cell lines. For infection studies, bacteria are microinjected into the lumen of the organoids. Infected organoids are processed for imaging. The described methods can be adapted to other organoids and infections with other bacteria, viruses or parasites. This allows the study of infection-induced changes in primary cells.

Stem cell derived cultures harbor tremendous potential to model infectious diseases. Here, the culture of mouse and human gastric organoids derived from adult stem cells is described. The organoids are microinjected with the gastric pathogen Helicobacter pylori.

감염증에 대한 모델로 Organoids : 헬리코박터 파이로리의 인간의 문화와 쥐 위장 Organoids 및 미세 주입

Recently infection biologists have employed stem cell derived cultures to answer the need for new and better models to study host-pathogen interactions. ...

Isolation and Ex Vivo Culture of V&#948;1+CD4+&#947;&#948; T Cells, an Extrathymic &#945;&#946;T-cell Progenitor

The thymus, the primary organ for the generation of &#945;&#946; T cells and backbone of the adaptive immune system in vertebrates, has long been considered as the only source of &#945;&#946;T cells. Yet, thymic involution begins early in life leading to a drastically reduced output of na&#239;ve &#945;&#946;T cells into the periphery. Nevertheless, even centenarians can build immunity against newly acquired pathogens. Recent research suggests extrathymic &#945;&#946;T cell development, however our understanding of pathways that may compensate for thymic loss of function are still rudimental. &#947;&#948; T cells are innate lymphocytes that constitute the main T-cell subset in the tissues. We recently ascribed a so far unappreciated outstanding function to a &#947;&#948; T cell subset by showing that the scarce entity of CD4+ V&#948;1+&#947;&#948; T cells can transdifferentiate into &#945;&#946;T cells in inflammatory conditions. Here, we provide the protocol for the isolation of this progenitor from peripheral blood and its subsequent cultivation. V&#948;1 cells are positively enriched from PBMCs of healthy human donors using magnetic beads, followed by a second step wherein we target the scarce fraction of CD4+ cells with a further magnetic labeling technique. The magnetic force of the second labeling exceeds the one of the first magnetic label, and thus allows the efficient, quantitative and specific positive isolation of the population of interest. We then introduce the technique and culture condition required for cloning and efficiently expanding the cells and for identification of the generated clones by FACS analysis. Thus, we provide a detailed protocol for the purification, culture and ex vivo expansion of CD4+ V&#948;1+&#947;&#948; T cells. This knowledge is prerequisite for studies that relate to this &#945;&#946;T cell progenitor`s biology and for those who aim to identify the molecular triggers that are involved in its transdifferentiation.

Isolation and Ex Vivo Culture of V&#948;1+CD4+&#947;&#948; T Cells, an Extrathymic &#945;&#946;T-cell Progenitor

Here, we provide an optimized protocol for the isolation and cloning of the scarce T-cell entity of peripheral V&#948;1+CD4+ T cells that is, as we showed recently, an extrathymic &#945;&#946; T-cell progenitor. This technique allows to quantitatively isolate, clone and efficiently expand these cells in ex vivo culture.

분리 및<em&gt; 전의 VIVO</emVδ1의&gt; 문화<sup&gt; +</sup&gt; CD4<sup&gt; +</sup&gt; γδ T 세포, Extrathymic αβT 세포 선조

The thymus, the primary organ for the generation of &#945;&#946; T cells and backbone of the adaptive immune system in vertebrates, has long been ...

Using X-ray Crystallography, Biophysics, and Functional Assays to Determine the Mechanisms Governing T-cell Receptor Recognition of Cancer Antigens

Human CD8+ cytotoxic T lymphocytes (CTLs) are known to play an important role in tumor control. In order to carry out this function, the cell surface-expressed T-cell receptor (TCR) must functionally recognize human leukocyte antigen (HLA)-restricted tumor-derived peptides (pHLA). However, we and others have shown that most TCRs bind sub-optimally to tumor antigens. Uncovering the molecular mechanisms that define this poor recognition could aid in the development of new targeted therapies that circumnavigate these shortcomings. Indeed, present therapies that lack this molecular understanding have not been universally effective. Here, we describe methods that we commonly employ in the laboratory to determine how the nature of the interaction between TCRs and pHLA governs T-cell functionality. These methods include the generation of soluble TCRs and pHLA and the use of these reagents for X-ray crystallography, biophysical analysis, and antigen-specific T-cell staining with pHLA multimers. Using these approaches and guided by structural analysis, it is possible to modify the interaction between TCRs and pHLA and to then test how these modifications impact T-cell antigen recognition. These findings have already helped to clarify the mechanism of T-cell recognition of a number of cancer antigens and could direct the development of altered peptides and modified TCRs for new cancer therapies.

Here, we describe methods that we commonly employ in the laboratory to determine how the nature of the interaction between the T-cell receptor and tumor antigens, presented by human leukocyte antigens, governs T-cell functionality; these methods include protein production, X-ray crystallography, biophysics, and functional T-cell experiments.

X 선 결정학, 생물 물리학 및 기능 분석 실험을 사용하면 메커니즘 집행 T 세포 암 항원의 수용체 인식을 확인하는 방법

Human CD8+ cytotoxic T lymphocytes (CTLs) are known to play an important role in tumor control. In order to carry out this function, the cell ...

The Ex Vivo Colon Organ Culture and Its Use in Antimicrobial Host Defense Studies

The intestine displays an architecture of repetitive crypt structures consisting of different types of epithelial cells, lamina propia containing immune cells, and stroma. All of these heterogeneous cells contribute to intestinal homeostasis and participate in antimicrobial host defense. Therefore, identifying a surrogate model for studying immune response and antimicrobial activity of the intestine in an in vitro setting is extremely challenging. In vitro studies using immortalized intestinal epithelial cell lines or even primary crypt organoid culture do not represent the exact physiology of normal intestine and its microenvironment. Here, we discuss a method of culturing mouse colon tissue in a culture dish and how this ex vivo organ culture system can be implemented in studies related to antimicrobial host defense responses. In representative experiments, we showed that colons in organ culture express antimicrobial peptides in response to exogenous IL-1&#946; and IL-18. Further, the antimicrobial effector molecules produced by the colon tissues in the organ culture efficiently kill Escherichia coli in vitro. This approach, therefore, can be utilized to dissect the role of pathogen- and danger-associated molecular patterns and their cellular receptors in regulating intestinal innate immune responses and antimicrobial host defense responses.

The Ex Vivo Colon Organ Culture and Its Use in Antimicrobial Host Defense Studies

The ex vivo organ culture allows investigation of biological processes in the context of the intact tissue architecture. Here, we introduce a method of ex vivo culture of the mouse colon, which can be used to study innate immunity and antimicrobial host defense in the intestine.

그만큼<em&gt; 전의 VIVO</em항균 호스트 방어 연구에&gt; 콜론 오르간 문화와 그것의 사용

The intestine displays an architecture of repetitive crypt structures consisting of different types of epithelial cells, lamina propia containing immune ...

Isolating Lymphocytes from the Mouse Small Intestinal Immune System

The intestinal immune system plays an essential role in maintaining the barrier function of the gastrointestinal tract by generating tolerant responses to dietary antigens and commensal bacteria while mounting effective immune responses to enteropathogenic microbes. In addition, it has become clear that local intestinal immunity has a profound impact on distant and systemic immunity. Therefore, it is important to study how an intestinal immune response is induced and what the immunologic outcome of the response is. Here, a detailed protocol is described for the isolation of lymphocytes from small intestine inductive sites like the gut-associated lymphoid tissue Peyer&#39;s patches and the draining mesenteric lymph nodes and effector sites like the lamina propria and the intestinal epithelium. This technique ensures isolation of a large numbers of lymphocytes from small intestinal tissues with optimal purity and viability and minimal cross compartmental contamination within acceptable time constraints. The technical capability to isolate lymphocytes and other immune cells from intestinal tissues enables the understanding of immune responses to gastrointestinal infections, cancers, and inflammatory diseases.

Here we describe a detailed protocol for the isolation of lymphocytes from the inductive sites including the gut-associated lymphoid tissue Peyer&#39;s patches and the draining mesenteric lymph nodes, and the effector sites including the lamina propria and the intestinal epithelium of the small intestinal immune system.

마우스 작은 장의 면역 시스템에서 세포를 분리

The intestinal immune system plays an essential role in maintaining the barrier function of the gastrointestinal tract by generating tolerant responses to ...

An Ex Vivo Chicken Primary Bursal-cell Culture Model to Study Infectious Bursal Disease Virus Pathogenesis

Infectious bursal disease virus (IBDV) is a birnavirus of economic importance to the poultry industry. The virus infects B cells, causing morbidity, mortality, and immunosuppression in infected birds. In this study, we describe the isolation of chicken primary bursal cells from the bursa of Fabricius, the culture and infection of the cells with IBDV, and the quantification of viral replication. The addition of chicken CD40 ligand significantly increased cell proliferation fourfold over six days of culture and significantly enhanced cell viability. Two strains of IBDV, a cell-culture adapted strain, D78, and a very virulent strain, UK661, replicated well in the ex vivo cell cultures. This model will be of use in determining how cells respond to IBDV infection and will permit a reduction in the number of infected birds used in IBDV pathogenesis studies. The model can also be expanded to include other viruses and could be applied to different species of birds.

An Ex Vivo Chicken Primary Bursal-cell Culture Model to Study Infectious Bursal Disease Virus Pathogenesis

Here we describe the isolation of chicken primary bursal cells from the bursa of Fabricius, the culture and infection of the cells with infectious bursal disease virus, and the quantification of viral replication.

Bursal 전염병 바이러스 병 인을 공부 하는 Ex Vivo 닭 기본 Bursal 세포 배양 모델

Infectious bursal disease virus (IBDV) is a birnavirus of economic importance to the poultry industry. The virus infects B cells, causing morbidity, ...

Confocal Imaging of Double-Stranded RNA and Pattern Recognition Receptors in Negative-Sense RNA Virus Infection

Double-stranded (ds) RNA is produced as a replicative intermediate during RNA virus infection. Recognition of dsRNA by host pattern recognition receptors (PRRs) such as the retinoic acid (RIG-I) like receptors (RLRs) RIG-I and melanoma differentiation-associated protein 5 (MDA-5) leads to the induction of the innate immune response. The formation and intracellular distribution of dsRNA in positive-sense RNA virus infection has been well characterized by microscopy. Many negative-sense RNA viruses, including some arenaviruses, trigger the innate immune response during infection. However, negative-sense RNA viruses were thought to produce low levels of dsRNA, which hinders the imaging study of PRR recognition of viral dsRNA. Additionally, infection experiments with highly pathogenic arenaviruses must be performed in high containment biosafety level facilities (BSL-4). The interaction between viral RNA and PRRs for highly pathogenic RNA virus is largely unknown due to the additional technical challenges that researchers need to face in the BSL-4 facilities. Recently, a monoclonal antibody (Mab) (clone 9D5) originally used for pan-enterovirus detection has been found to specifically detect dsRNA with a higher sensitivity than the traditional J2 or K1 anti-dsRNA antibodies. Herein, by utilizing the 9D5 antibody, we describe a confocal microscopy protocol that has been used successfully to visualize dsRNA, viral protein and PRR simultaneously in individual cells infected by arenavirus. The protocol is also suitable for imaging studies of dsRNA and PRR distribution in pathogenic arenavirus infected cells in BSL4 facilities.

Double-stranded RNA produced during RNA virus replication can be recognized by pattern recognition receptors to induce an innate immune response. For negative-sense RNA viruses, the interaction between the low-level dsRNA and PRRs remains unclear. We have developed a confocal microscopy method to visualize arenavirus dsRNA and PRR in individual cells.

이중 가닥 RNA와 패턴 인식 수용 체 부정적인 감 RNA 바이러스 감염에의 confocal 영상

Double-stranded (ds) RNA is produced as a replicative intermediate during RNA virus infection. Recognition of dsRNA by host pattern recognition receptors ...