JoVE Journal

Genetics

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Nanyang Technological University

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation

Amino acid-level signal-to-noise analysis determines the prevalence of genetic variation at a given amino acid position normalized to background genetic variation of a given population. This allows for identification of variant "hotspots" within a protein sequence (signal) that rises above the frequency of rare variants found in a population (noise).

Chapters in this video

0:04

Title

0:33

Gene and Specific Splice Isoform Identification

1:37

Amino Acid Level Signal-to-Noise Calculation and Mapping

3:55

Protein Domain Topology and Variant Position Overlay

5:42

Results: Representative Amino Acid-Level Signal-to-Noise Analysis of KCNQ1-Encoded KCNQ1 (Kv7.1)

6:56

Conclusion

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