We thank the Flow Cytometry Core Facility, the Histopathology Laboratory, the Fralin Imaging Center at Virginia Polytechnic Institute, and State University for technical support. This work is supported by various NIH and internal grants.

The present protocol is approved by the Institutional Animal Care and Use Committee (IACUC) at Virginia Tech. Since lupus disease has a higher incidence in females, only female MRL/lpr mice were used. The sample collection was started at 4 weeks of age and finished at 15 weeks. The mice were obtained from commercial sources (see Table of Materials) and were bred and maintained in a specific pathogen-free environment following the institutional guidelines.
1. Proteinuria test
<ol>
	<li>Collect urine following the steps below.
	<ol>
		<li>Sterilize the hood by spraying 70% ethanol. Place a sterile plastic sheet on the surface. Prepare tips, 1.5 mL tubes, and a pipette to collect about 20 &#956;L of the liquid. 
		NOTE: Tips and tubes must be sterile and without any pre-treatment.</li>
		<li>Take the cage and spray 70% ethanol before putting it inside the hood.</li>
		<li>Hold the mouse with one hand and use the other hand to massage the ventral area from top to bottom gently.</li>
		<li>Use a 1.5 mL tube or pipette to collect the urine directly, or if the sample drops, collect it from the plastic sheet. Use fresh gloves, sheets, and tips for each sample. 
		NOTE: If this does not work, use a sterile beaker to isolate the mouse, then collect the urine from the beaker after the mouse urinates.</li>
		<li>Put the mouse back in the cage. Take out another mouse and repeat steps 1.1.3-1.1.4. 
		NOTE: Always clean the plastic sheet and the beaker with 70% ethanol after collecting the sample for each mouse. At least five mice per group are necessary for statistical significance. Urine samples can be stored at -80 &#176;C until use for up to 12 months.</li>
	</ol>
	</li>
	<li>Quantify the proteins by the Bradford method24.
	<ol>
		<li>Allow urine samples, Albumin standard, and the Bradford reagent to come to room temperature (RT) by keeping them outside the freezer for 10-20 min. 
		NOTE: Bradford reagent and Albumin standard are included in a commercially available kit (see Table of Materials). The starting concentration of the Albumin standard is 2 mg/mL. Serial dilutions (1:2 six times) must be done with water.</li>
		<li>Add Bradford reagent to a 96-well plate (200 &#956;L/well), undiluted.</li>
		<li>Pipette 5 &#181;L of undiluted urine sample per well and use the tip to pipette up and down several times to mix properly.</li>
		<li>Add standards (400, 200, 100, 50, 25, 12.5 mg/dL) in duplicates. Leave a couple of wells as blanks. 
		&#8203;NOTE: The addition of samples and standards needs to be done quickly.</li>
		<li>Let it stand for 5-10 min at RT.</li>
		<li>Read the plate at 595 nm in a plate reader as per the manufacturer&#39;s protocol (see Table of Materials).</li>
	</ol>
	</li>
</ol>
2. Isolation of the kidney cells
<ol>
	<li>Euthanize the mouse with CO2 (flow rate: 30%-70% volume/min, to achieve unconsciousness or death) in a chamber followed by cervical dislocation. Proceed with the dissection to collect both kidneys. Place one-and-a-half-kidneys in an ice-cold C10 medium. Put the other half kidney in OCT (step 3.1.1). 
	NOTE: C10 is made with RPMI 1640 supplemented with 10% fetal bovine serum, 1 mM of sodium pyruvate, 1% of 100x MEM nonessential amino acids, 10 mM of HEPES, 55 &#181;M of 2-mercaptoethanol, and 100 U/mL of penicillin-streptomycin (see Table of Materials).</li>
	<li>Cut the kidneys into grain size (1-2 mm3 pieces) and digest in 5 mL of digestion buffer containing 1 mg/mL of collagenase and 0.2 mg/mL of DNase I (see Table of Materials) in RPMI 1640 medium containing 10 mmol/L of HEPES for 1 h with continuous gentle shaking at 37 &#176;C. 
	NOTE: Add 1 mL digestion buffer in a sterile 2 mL tube and use sterile scissors to chop the kidney.</li>
	<li>Add 10 mL of 1x ice-cold PBS containing 10 mM of ethylenediaminetetraacetic acid (EDTA) and incubate for 10 min on ice. Then vortex the suspension twice.</li>
	<li>Filter the cell suspension through a 100 &#181;M strainer and wash with 10 mL of HBSS-full. 
	NOTE: HBSS-full contains 5 mM of EDTA, 0.1% BSA, and 10 mM of HEPES.</li>
	<li>Centrifuge at 350 x g for 10 min at RT.</li>
	<li>Prepare 30%, 37% and 70% Stock Isotonic Percoll (SIP) solution. 
	NOTE: Mix 1 part volume of 10x PBS and 9 parts volume of Percoll to prepare SIP (see Table of Materials); use HBSS-full to dilute SIP to 30%, 37%, and 70% SIP.</li>
	<li>Resuspend cells in 5 mL of 30% SIP and load 37% of 5 mL (top) and 70% of 5 mL (bottom), making SIP gradient, slowly with a paster pipette.</li>
	<li>Centrifuge with Up9 down0 (or brake 0) at 1000 x g for 30 min at RT.</li>
	<li>Collect leukocytes from the 37%-70% interface and resuspend them in 5 mL of C10.</li>
	<li>Centrifuge at 350 x g for 10 min at 4 &#176;C.</li>
	<li>Resuspend the cell pellet in 3 mL of FACS buffer. Cells are ready for FACS staining. 
	NOTE: FACS buffer contains 1x PBS and 0.1% Bovine Serum Albumin (BSA).</li>
	<li>Centrifuge at 350 x g for 5 min at 4 &#176;C and discard the supernatant (SN), leaving about 50 &#181;L. 
	NOTE: To remove the supernatant, carefully pour or pipette the solution away from the solid or use a semiautomatic vacuum to aspirate the supernatant.</li>
	<li>Add 50 &#181;L of FcR block (see Table of Materials) per tube (prediluted 1/50 in 1x PBS); mix and incubate on ice in the dark for 10 min.</li>
	<li>Add 2 mL of FACS buffer to wash.</li>
	<li>Centrifuge at 350 x g for 5 min at 4 &#176;C and discard SN, leaving about 50 &#181;L.</li>
	<li>Add 20 &#181;L of the appropriate fluorescent dye (dilute 1/100 with 1x PBS, see Table of Materials) and let it stand for 15-30 min on ice.</li>
	<li>Add 50 &#181;L of antibody15 mix per tube: CD138-BV711 (1/200 in 1x PBS) and CD45-AF700 (1/200 in 1x PBS) (see Table of Materials).</li>
	<li>Incubate on ice in the dark for 15-30 min and add 3 mL of FACS buffer.</li>
	<li>Centrifuge at 350 x g for 5 min at 4 &#176;C and vacuum SN, leaving about 50 &#181;L. Resuspend in 200 &#181;L of 1x PBS. This is now ready to be analyzed by flow cytometry.</li>
</ol>
3. Immunofluorescent staining
<ol>
	<li>Perform the sample collection.
	<ol>
		<li>Embed the half kidney in the small plastic cryomold with the Optimal Cutting temperature (OCT) compound (see Table of Materials).</li>
		<li>Add dry ice into a polystyrene foam box (see Table of Materials), and carefully put the cryomold on top of the dry ice. Ensure that the cryomolds are placed flat. 
		NOTE: It takes 3-4 min for the OCT compound to solidify and turn white.</li>
		<li>Take the cryomold out and wrap it in aluminum foil. Store it at -80 &#176;C until further use. 
		NOTE: This can be stored at -80 &#176;C for at least 1 year.</li>
	</ol>
	</li>
	<li>Perform sectioning and fixing of the sample.
	<ol>
		<li>Cut the samples into 4 &#181;m sections, wait for at least 2-3 h to dry, and then fix with cold acetone (at 4 &#176;C) for 10 min. 
		NOTE: Be careful when using acetone, which requires a specialized chemical hood.</li>
		<li>After fixing the slides, air dry for 0.5-1 h and store them for a short time at -20 &#176;C, or for a long time at -80 &#176;C.</li>
	</ol>
	</li>
	<li>Stain the samples.
	<ol>
		<li>Refix the slides in cold acetone for 5-10 min.</li>
		<li>Allow the sections to warm up to RT. Use a PAP pen (see Table of Materials) around the section and allow it to dry. 
		NOTE: Nail enamel can be used as well. This step prevents antibody dilution from floating all over the slide.</li>
		<li>Place slides in 1x Tris-buffered saline (TBS) in the Coplin jar (see Table of Materials) for 20 min, put the jar on the shaker, and shake gently.</li>
		<li>Pour off 1x TBS and fill the jar with 1x TBS, 5% BSA, and 0.1% Tween 20. Incubate for 20 min on the shaker, shake gently.</li>
		<li>Take the slides out and wipe the bottom of the slides dry. If necessary, shake the slides dry. Add 100 &#181;L of conjugated antibodies25 C3-FITC (1/100) and IgG2a-PE (1/100) to the section (see Table of Materials). Incubate at RT in a humidified chamber for 1 h.</li>
		<li>Wash the section 3 times in 1x TBS, 5% BSA, and 0.1 % Tween 20 for 10 min on the shaker.</li>
		<li>Shake dry the slides and mount the section with an antifade reagent (see Table of Materials) then a coverslip.</li>
		<li>Store the slides at 4 &#176;C until viewing under the microscope (e.g., confocal microscope or imaging system microscope). Quantify images using software and subtract background signals when comparing the fluorescence intensity between regions.</li>
		<li>For image analysis using the ImageJ software (see Table of Materials), outline the desired region.</li>
		<li>Set standard parameters by clicking on Analyze, then Set Measurements and Measure Area to get the results.</li>
		<li>Transfer the data obtained from the measure windows to a spreadsheet. 
		NOTE: A small area can be selected from the image as a background; it shouldn&#39;t have any fluorescence.</li>
		<li>Once done, click on Analyze to measure the region and transfer data again to the previous spreadsheet.</li>
		<li>Repeat steps 3.3.11-3.3.12 for several regions.</li>
		<li>Calculate the mean fluorescence as Corrected Cell Fluorescence (CCF) = Integrated density - (Selected cell region x Mean background fluorescence).</li>
		<li>Calculate for each region and analyze data using the graphing and statistics software (see Table of Materials).</li>
	</ol>
	</li>
</ol>

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The authors declare that there is no conflict of interest.

LN is a leading cause of mortality in SLE patients, and factors aggravating the disease remain unclear. The application of this protocol is to characterize renal function using multiple methods, including measurement of proteinuria, FACS analysis of isolated kidney leukocytes, and immunofluorescence staining of frozen kidney sections.
One important point to consider while collecting urine is that one has to be consistent with the time of the day and the location of urine collection. Mice are nocturnal animals, so the most accurate samples are collected in the late afternoon before mice start being active. Another reason for choosing this time is that MRL/lpr mice tend to drink a lot of water at night, leading to diluted urine. Thus, collection at the wrong time may increase the urine&#39;s concentration and/or volume variabilities. It is also important to collect as much urine as possible to get accurate results.
The Bradford assay gives us an estimate of how much protein is present. It is not specific for any SLE marker proteins but good enough to give an idea of disease progression26. In addition, this method is cost-effective compared to others. Notably, the Bradford assay is time-sensitive; therefore, it must be completed within half an hour. Samples tend to have increased values or high false results if one waits too long. Another benefit compared to the commercial reagent strips for urinalysis is that it gives accurate numbers rather than a range within the urine sample. Scoring strips can give ambiguous results, particularly in the higher range9,10,24.
For the isolation of kidney leukocytes, the first key step is to perform the dissection as fast as possible. The viability of kidney cells greatly impacts the success of subsequent FACS analysis. When kidneys are being processed, each step is time- and temperature-sensitive. It needs to be noted that DNase I and collagenase concentrations and temperature are important for maximum efficiency, as they eliminate DNA and allow the disintegration of the organ, respectively27. The second key step is isolating cells, divided into two important processes. The first one is using the strainer that allows the removal of tissue debris; the second process involving Percoll is the most crucial step and requires focus and patience. When doing the density gradient with Percoll, it is important to maintain clear interfaces between different concentrations of SIP. It is recommended to use a Pasteur pipette since the flux and pressure can be controlled manually. Additional phases can be better built with the slow dispense of the SIP solution or even drop by drop. Once phases are established, the tube needs to be handled gently; otherwise, the phases will mix immediately, and samples will be lost, as it is impossible to separate the phases again. In addition, it is important to centrifuge the tube without a break because breaking could be too aggressive, leading to the loss of separate phases. The leukocytes are then recovered from interphase between 30% and 37% SIP.We analyzed one cell population in this example, plasma cells (CD45+ and CD138+). However, this technique is not limited to B cells; it can be used for other cell types and intracellular staining28.
The third method is a powerful tool for visualizing intracellular localizations of given protein depositions. Once tissues are fixed with acetone, it is important to perform adequate washing, so antibodies only attach to the target. Next, blocking with BSA reduces nonspecific binding and false positives. Direct immunofluorescence is usually recommended, as it is faster than indirect immunofluorescence with a secondary antibody, which is time-consuming, especially considering the extra washing and incubation steps. However, direct immunofluorescence restricts the flexibility of antibody selection compared to indirect immunofluorescence29. Therefore, both can be valuable methods depending on the purpose. Furthermore, it needs to be mentioned that dilution factors are key while staining for IHC. If the dilution is not well done, increased background (not enough antibody dilution) or weak staining (too much dilatation) will show on the microscopy images. It is important to start with serial dilutions of the antibody to optimize the antibody concentration for a better target-to-background ratio. Another step to consider is the amount of incubation time with the antibodies. The longer the antibody is in contact with the sample, the more nonspecific binding can be created.
The limitations of the present methods are as follows. Certain clinical parameters for LN, such as the albumin/creatinine ratio, cannot be revealed using these methods. In addition, some samples may have poor acid solubility leading to a high concentration reading above the standard curve. This requires further dilutions of samples or the addition of surfactants to precipitate the dye30. Moreover, this protocol may not be suitable if many cells are needed after kidney leukocyte isolation. The current kidney cell isolation protocol involves several washing steps, digestion, and isolation steps to maximize the removal of other cells, so even though the cell purity is high at the end, the cell number is usually low. Furthermore, it is a long procedure, so cell viability can be compromised. Other ready-to-use assays are more suitable for clinical use; however, the present methods may provide accurate results with a smaller budget for research laboratories.
In summary, three different efficient and accurate techniques are presented in this protocol to characterize the LN progression. Combining the Bradford method for the proteinuria level, FACS analysis for renal infiltration of the leukocytes, and IHC analysis for the renal deposition of IgG2a and C3, a clear picture of renal dysfunction in female MRL/lpr mice as a model of human LN is successfully established.

The kidney&#39;s primary function is the elimination of toxic substances through urine while maintaining the homeostasis of water and salts1. This function is threatened in patients with systemic lupus erythematosus (SLE), leading to so-called lupus nephritis (LN). LN is a consequence of the immune system attacking the kidney, leading to persistent kidney inflammation, therefore losing its ability to clean waste from the blood and regulate salt and fluid concentrations. This will eventually lead to renal failure, which can be fatal. During the nephritic process, circulating B cells, T cells, and monocytes are recruited to the kidney, secreting chemokines, cytokines, and immune complex-forming autoantibodies. This ultimately results in endothelial cell damage, membranous injuries, renal tubular atrophy, and fibrosis2.
MRL/Mp-Faslpr (MRL/lpr) lupus-prone mice is a classical mouse model exhibiting lupus-like clinical signs that resemble human SLE3. This model has been instrumental in understanding one of the leading causes of mortality in SLE patients, lupus nephritis (LN)4. In both human and mouse SLE, LN is characterized by gradual inflammation triggered by renal deposition of immune complexes, followed by complement activation, recruitment of inflammatory cells, and loss of renal function5. The immune complex deposition is the first step to induce chemokine and cytokine production by intrinsic renal cells, which expands the inflammatory response by recruiting immune cells6. The current protocol presents several techniques to follow renal disease progression that analyze cell infiltration and immune complex deposition.
Urine collected every week allows for detection and visualization of the time course of proteinuria before, during, and after lupus onset. Proteinuria as a biomarker can determine the biological progression of LN. Other advantages of this technique are that it is non-invasive, cost-efficient, and easy to implement7. When the kidney is working perfectly, the proteinuria level is consistently low; however, in MRL/lpr mice, after 8-9 weeks of age, a gradual increase of the proteinuria level, that is eventually high enough to cause renal failure8, is observed. Multiple reagent strips and colorimetric reagents are commercially available to monitor the issue. However, the Bradford assay is cheap and very accurate in determining the onset of proteinuria and the course of lupus nephritis. This assay is quick, and the reagent is not affected by the presence of solvents, buffers, reducing agents, and metal-chelating agents that may be in your sample9,10,11.
One important aspect to consider is cell infiltration in the kidney. These infiltrates promote pathogenesis by triggering the secretion of soluble factors such as cytokines to worsen inflammation12. To better understand what cell populations are present in the infiltrates, a useful method is to isolate leukocytes13. Here, the detection of renal infiltration of B cells is used as an example. The procedure begins with a digestion process with deoxyribonuclease (DNase) and collagenase, followed by density gradient separation that removes debris, red blood cells, and dense granulocytes. The reason for isolating B cells (CD19+) and plasma cells (CD138+) is that lupus kidneys can concentrate these cells14. It is suggested that the presence of B cells in small aggregates in the kidney can indicate clonal expansion and, consequently, immunoglobulin (Ig) production. Plasma cells are well-known to be present in these aggregates as well15. Once leukocytes have been isolated, fluorescence-activated cell sorting (FACS) can be used to analyze the cells of interest upon staining with different fluorescence-conjugated antibodies.
Immunofluorescence is one of the immunohistochemistry (IHC) detection methods that allows for fluorescent visualization of proteins in 4 &#956;m thick kidney tissue samples. Other IHC detection methods depend on the nature of analytes, binding chemistry, and other factors16. Immunofluorescence is a rapid identification method that exposes the antigen to its counterpart antibody labeled with a specific fluorochrome (or a fluorescent dye). When excited, it produces light that a fluorescence microscope can detect. This technique can be used to observe the deposition of complement C3 and IgG2a17. Excessive complement cascade activation could be associated with an uncontrolled immune response and loss-of-function18. Immune deposition of anti-double-stranded DNA (anti-dsDNA) autoantibodies in the kidney is a major concern19, where those with IgG2a isotype have been associated with LN20. Specifically, anti-dsDNA antibodies exhibit more pathogenicity and affinity to nuclear materials, forming immune complexes21. When IgG2a is present, the complement cascade, including C3, is activated to clear the immune complexes22. The C3 and IgG2a markers can be quantified individually or overlaid to establish their correlation.
Notably, serum creatinine measurement is another reliable technique that can be used together with microscopic hematuria and kidney biopsies to diagnose LN23. However, the presence of proteinuria is a strong indicator of glomerular damage. In that sense, monitoring the proteinuria level during lupus can detect disease onset and complement other methods for diagnosing lupus. In addition, immune complexes deposited in glomeruli can induce an inflammatory response, activate the complement system, and recruit more inflammatory cells. Another noteworthy point of this protocol is B cell infiltration in the kidney. This, together with the infiltrated T cells, amplifies local immune responses that trigger organ damage. Importantly, the classification of LN is not only based on glomerular morphologic changes seen in microscopy but also immune deposits observed with immunofluorescence. Therefore, in this protocol, accurate and cost-effective methods for the analysis of renal function are offered in laboratory settings.

<table><tbody><tr><td>10x Tris-Buffered Saline (TBS)</td><td>Thermo Fisher Scientific</td><td>J60764.K2</td><td></td></tr><tr><td>2-mercaptoethanol</td><td>Thermo Fisher Scientific</td><td>21985-023</td><td></td></tr><tr><td>Anti-Human/Mouse C3</td><td>Cedarlane</td><td>CL7632F</td><td></td></tr><tr><td>Anti-Mouse CD138 BV711</td><td>Biolegend</td><td>142519</td><td></td></tr><tr><td>Anti-Mouse CD45 AF700</td><td>Biolegend</td><td>103127</td><td></td></tr><tr><td>Bovine Serum Albumin</td><td>Sigma-Aldrich</td><td>A9418-100G</td><td></td></tr><tr><td>Collagenase D</td><td>Sigma-Aldrich</td><td>11088882001</td><td></td></tr><tr><td>Confocal Microscope LSM 880</td><td>Zeiss</td><td>LSM 880</td><td></td></tr><tr><td>Coplin jar</td><td>Fisher Scientific</td><td>50-212-281</td><td></td></tr><tr><td>Cryomold</td><td>Fisher Scientific</td><td>NC9511236</td><td></td></tr><tr><td>Density gradient medium</td><td>GE Healthcare</td><td>17-1440-02</td><td>Percoll</td></tr><tr><td>DEPC-Treated water</td><td>Thermo Fisher Scientific</td><td>AM9906</td><td></td></tr><tr><td>DNase I</td><td>Sigma-Aldrich</td><td>D4527</td><td></td></tr><tr><td>dsDNA-EC</td><td>InvivoGen</td><td>tlrl-ecdna</td><td></td></tr><tr><td>Ethylenediaminetetraacetic Acid</td><td>Fisher Scientific</td><td>S311-500</td><td>EDTA</td></tr><tr><td>EVOS M5000 Microscope imaging system</td><td>Thermo Fisher Scientific</td><td>AMF5000</td><td></td></tr><tr><td>FACS Fusion Cell sorter</td><td>BD Biosciences</td><td>FACS Fusion</td><td></td></tr><tr><td>Fetal Bovine Serum - Premium, Heat Inactivated</td><td>R&amp;amp;D systems</td><td>S11150H</td><td></td></tr><tr><td>Fisherbrand 96-Well Polystyrene Plates</td><td>Fisher Scientific</td><td>12-565-501</td><td></td></tr><tr><td>Graphpad prism</td><td>GraphPad</td><td>N/A</td><td></td></tr><tr><td>Hank&amp;rsquo;s Balanced Salt Solution</td><td>Thermo Fisher Scientific</td><td>14175-079</td><td></td></tr><tr><td>HEPES</td><td>Thermo Fisher Scientific</td><td>15630-080</td><td></td></tr><tr><td>ImageJ software</td><td>National Institutes of Health</td><td>N/A</td><td></td></tr><tr><td>Lactobacillus reuteri Kandler et al.</td><td>ATCC</td><td>23272</td><td></td></tr><tr><td>MEM non-essential amino acids</td><td>Thermo Fisher Scientific</td><td>11140-050</td><td></td></tr><tr><td>MRL/MpJ-Fas lpr /J Mice (MRL/lpr)</td><td>Jackson Lab</td><td>485</td><td></td></tr><tr><td>Nail enamel</td><td>N/A</td><td>N/A</td><td>Any conventional store</td></tr><tr><td>O.C.T compound</td><td>Tisse-Tek</td><td>4583</td><td></td></tr><tr><td>PAP pen</td><td>Sigma-Aldrich</td><td>Z377821</td><td></td></tr><tr><td>Peel-A-Way Disposable Embedding Molds</td><td>Polysciences</td><td>R-30</td><td></td></tr><tr><td>Penicillin-Streptomycin</td><td>Thermo Fisher Scientific</td><td>15140-122</td><td></td></tr><tr><td>Phosphate-buffered saline (PBS)</td><td>Thermo Fisher Scientific</td><td>70011069</td><td></td></tr><tr><td>Pierce 20x TBS Buffer</td><td>Thermo Fisher Scientific</td><td>28358</td><td></td></tr><tr><td>Pierce Coomassie Plus (Bradford) Assay kit</td><td>Thermo Fisher Scientific</td><td>23236</td><td>Albumin standard included</td></tr><tr><td>ProLon Gold Antifade Mountant</td><td>ThermoFisher</td><td>P36934</td><td></td></tr><tr><td>Purified Rat Anti-Mouse CD16/CD32</td><td>BD Biosciences</td><td>553141</td><td>FcR block</td></tr><tr><td>RPMI 1640</td><td>Thermo Fisher Scientific</td><td>11875-093</td><td></td></tr><tr><td>Sodium pyruvate</td><td>Thermo Fisher Scientific</td><td>11360-070</td><td></td></tr><tr><td>SpectraMax M5</td><td>Molecular Devices</td><td>N/A</td><td>SoftMax Pro 6.1 software</td></tr><tr><td>Sterile cell Strainers 100 &amp;micro;M</td><td>Fisher Scientific</td><td>22363549</td><td></td></tr><tr><td>Tween 20</td><td>Fisher Scientific</td><td>BP337-500</td><td></td></tr><tr><td>Vancomycin Hydrochloride</td><td>Goldbio</td><td>V-200-1</td><td></td></tr><tr><td>Zombie Aqua</td><td>Biolegend</td><td>423102</td><td>fluorescent dye for flow cytometry analysis</td></tr></tbody></table>

analyses of proteinuria, renal infiltration of leukocytes, and renal deposition of proteins in lupus-prone mrl/lpr mice

Systemic lupus erythematosus (SLE) is an autoimmune disorder with no known cure and is characterized by persistent inflammation in many organs, including the kidneys. Under such circumstances, the kidney loses its ability to clean waste from the blood and regulate salt and fluid concentrations, eventually leading to renal failure. Women, particularly those of childbearing age, are diagnosed nine times more often than men. Kidney disease is the leading cause of mortality in SLE patients. The present protocol describes a quick and simple method to measure excreted protein levels in collected urine, tracking lupus progression over time. In addition, an approach to isolate kidney mononuclear cells is provided based on size and density selection to investigate renal infiltration of leukocytes. Furthermore, an immunohistochemical method has been developed to characterize protein deposition in the glomeruli and leukocyte infiltration in the tubulointerstitial space. Together, these methods can help investigate the progression of chronic inflammation associated with the kidneys of lupus-prone MRL/lpr mice.

The protocol uses multiple methods to assess MRL/lpr mice for lupus nephritis. First, a procedure is described to study increased proteinuria levels due to kidney dysfunction over time. As shown in Figure 1, female mice were treated with oral gavage of 200 &#181;L of phosphate-buffered saline (1x PBS) as the control group and probiotic Lactobacillus reuteri as the treatment group, at a concentration of 109 cfu/mL, twice a week. Treatment started at 3 weeks old and finished at 15 weeks old. The mice group treated with L. reuteri had a more aggressive proteinuria progression than the control group.
<img alt="Figure 1" class="xfigimg" src="/files/ftp_upload/63506/63506fig01.jpg" /> 
Figure 1: Detection of protein levels in the urine of MRL/lpr mice over time. n = 5 mice per group. The statistics were performed with the simple linear regression test. *P &#60; 0.05, **P &#60; 0.01. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/63506/63506fig01large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
Figure 2 shows the FACS analysis of the isolated kidney leukocytes. The mice were treated with vancomycin (2 g/L) or vancomycin plus E. coli dsDNA (80 &#181;g) in this experiment. Vancomycin was given along with the drinking water during the indicated period of time. Oral gavage of bacterial DNA was administered to the vancomycin-treated mice once a week for four consecutive weeks at 4, 5, 6, and 7 weeks of age. E. coli dsDNA was expected to trigger the renal infiltration of plasma cells leading to compromised kidney function, but no significant difference was found.
<img alt="Figure 2" class="xfigimg" src="/files/ftp_upload/63506/63506fig02.jpg" /> 
Figure 2: Analysis of plasma cells in isolated kidney leukocytes. (A) Sequential gating strategy: total cells, single cells, live cells, CD45+ cells, and finally CD138+ cells. (B) Percentage of plasma cells after treatment with van (Vancomycin) or van + DNA (Vancomycin + E. coli dsDNA) for 3 weeks (n &#8805; 5 mice per group). No statistical significance (&#39;ns&#39;) was observed. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/63506/63506fig02large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
Figure 3 shows immunofluorescence staining of complement C3 and IgG2a on female MRL/lpr kidney sections. In this experiment, the effect of environmental factors was compared concerning the renal deposition of C3 and IgG2a. In-house mice were bred in the animal facility for several generations, and they were compared to recently purchased mice from a vendor. The immunohistochemical analysis did not show any difference between different facilities.
<img alt="Figure 3" class="xfigimg" src="/files/ftp_upload/63506/63506fig03.jpg" /> 
Figure 3: Detection of complement C3 and IgG2a in kidney sections via immunofluorescence staining. (A) Representative pictures of kidney sections stained with anti-C3-FITC (Green) and anti-IgG2a-PE (Red). (B) Comparison of corrected cell fluorescence (CCF) between the two groups (n &#8805; 5 mice per group). Scale bar = 100 &#181;M. No statistical significance (&#39;ns&#39;) was observed. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/63506/63506fig03large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>

Watch this Scientific Journal Video about Analyses of Proteinuria, Renal Infiltration of Leukocytes, and Renal Deposition of Proteins in Lupus-prone MRL/lpr Mice at JoVE.com

Analyses of Proteinuria, Renal Infiltration of Leukocytes, and Renal Deposition of Proteins in Lupus-prone MRL/lpr Mice

The present protocol describes a method to track lupus progression in mice. Two additional procedures are presented to characterize lupus nephritis based on cell infiltration and protein deposition in the kidneys.

Systemic lupus erythematosus (SLE) is an autoimmune disorder with no known cure and is characterized by persistent inflammation in many organs, including ...

analyses-proteinuria-renal-infiltration-leukocytes-renal-deposition

Nanyang Technological University

Research

JoVE Journal

Immunology and Infection

2.8K Views.  Virginia Polytechnic Institute and State University. Deze methoden kunnen helpen bij het onderzoeken van de progressie van chronische ontsteking geassocieerd met nieren bij lupuspatiënten. We bieden een betrouwbaar en kosteneffectief alternatief dat kan worden gebruikt om het ziekteverloop bij lupus te volgen. Begin met het steriliseren van de kap door 70% ethanol te spuiten en plaats een steriele plastic plaat op het oppervlak.Bereid vervolgens tips, buisjes van 1,5 milliliter en een pipet voor om ongeveer 20 microliter van de urine te...

Video: Analyses of Proteinuria, Renal Infiltration of Leukocytes, and Renal Deposition of Proteins in Lupus-prone MRL/lpr Mice

Isolation of Glomeruli and In Vivo Labeling of Glomerular Cell Surface Proteins

Proteinuria results from the disruption of the glomerular filter that is composed of the fenestrated endothelium, glomerular basement membrane, and podocytes with their slit diaphragms. The delicate structure of the glomerular filter, especially the slit diaphragm, relies on the interplay of diverse cell surface proteins. Studying these cell surface proteins has so far been limited to in vitro studies or histologic analysis. Here, we present a murine in vivo biotinylation labeling method, which enables the study of glomerular cell surface proteins under physiologic and pathophysiologic conditions. This protocol contains information on how to perfuse mouse kidneys, isolate glomeruli, and perform endogenous immunoprecipitation of a protein of interest. Semi-quantitation of glomerular cell surface abundance is readily available with this novel method, and all proteins accessible to biotin perfusion and immunoprecipitation can be studied. In addition, isolation of glomeruli with or without biotinylation enables further analysis of glomerular RNA and protein as well as primary glomerular cell culture (i.e., primary podocyte cell culture).

Isolation of Glomeruli and In Vivo Labeling of Glomerular Cell Surface Proteins

Here we present a protocol for murine in vivo labeling of glomerular cell surface proteins with biotin. This protocol contains information on how to perfuse mouse kidneys, isolate glomeruli, and perform endogenous immunoprecipitation of the protein of interest.

Proteinuria results from the disruption of the glomerular filter that is composed of the fenestrated endothelium, glomerular basement membrane, and ...

Biochemistry

The bm12 Inducible Model of Systemic Lupus Erythematosus (SLE) in C57BL/6 Mice

Systemic lupus erythematosus (SLE) is an autoimmune disease with diverse clinical and immunological manifestations. Several spontaneous and inducible animal models mirror common components of human disease, including the bm12 transfer model. Upon transfer of bm12 splenocytes or purified CD4 T cells, C57BL/6 mice rapidly develop large frequencies of T follicular helper cells (Tfh), germinal center (GC) B cells, and plasma cells followed by high levels of circulating anti-nuclear antibodies. Since this model utilizes mice on a pure C57BL/6 background, researchers can quickly and easily study disease progression in transgenic or knockout mouse strains in a relatively short period of time. Here we describe protocols for the induction of the model and the quantitation Tfh, GC B cells, and plasma cells by multi-color flow cytometry. Importantly, these protocols can also be used to characterize disease in most mouse models of SLE and identify Tfh, GC B cells, and plasma cells in other disease models.

The bm12 Inducible Model of Systemic Lupus Erythematosus SLE in C57BL/6 Mice

The transfer of bm12 lymphocytes into a C57BL/6 recipient is an established model of systemic lupus erythematosus. Here we describe how to initiate disease using this model and how to characterize T follicular helper cells, germinal center B cells and plasma cells by flow cytometry.

Systemic lupus erythematosus (SLE) is an autoimmune disease with diverse clinical and immunological manifestations. Several spontaneous and inducible ...

Medicine

Comparative Proteomic Analysis of Whole Kidney, Medulla, and Cortical Tubules in Diabetic Pathogenesis of Kidney Injury in Mice

Defining the sequence of events in renal disease is the cornerstone of clinical practice in the nephrologist toolkit. Tissue proteomic analyses are a significant approach to understanding the fundamental physiological and molecular processes of renal pathophysiology. The methods and protocols we present here will allow for the molecular dissection of the kidney in each specific region of interest related to disease sequelae. To determine the effects of disease on specific kidney regions and structures with unique functions, the goals of this protocol are to demonstrate simplified mouse kidney compartmentalization and renal cortical tubule isolation techniques in tandem with streamlined label-free quantitative proteomic workflows. Combining these methods will assist in the identification of perturbed molecular patterns in the whole kidney, medullary compartments, and cortical tubule structures of kidneys, with the ultimate and eventual goal of single-cell proteomics in pathological contexts. Applying these methods in virtually any disease model will be helpful in delineating mechanisms of pathology related to kidney dysfunction.

Here, we present a detailed protocol for proteomic analysis of the whole kidney, isolated cortical tubule, and medullary proteomes. The study also compares regional proteomes in a diabetic mouse model and non-diabetic mice.

Defining the sequence of events in renal disease is the cornerstone of clinical practice in the nephrologist toolkit. Tissue proteomic analyses are a ...

Induction of Nephrotic Syndrome in Mice by Retrobulbar Injection of Doxorubicin and Prevention of Volume Retention by Sustained Release Aprotinin

Nephrotic syndrome is the most extreme manifestation of proteinuric kidney disease and characterized by heavy proteinuria, hypoalbuminemia, and edema due to sodium retention and hyperlipidemia. To study the pathophysiology of this syndrome, rodent models have been developed based on the injection of toxic substances such as doxorubicin causing podocyte damage. In mice, only few strains are susceptible to this model. In wildtype 129S1/SvImJ mice, the administration of doxorubicin by rapid intravenous injection to the retrobulbar sinus induces experimental nephrotic syndrome that features all the symptoms of human disease including sodium retention and edema. After the onset of proteinuria, mice exhibit increased urinary serine protease activity that leads to the activation of the epithelial sodium channel (ENaC) and sodium retention. Pharmacological inhibition of urinary serine proteases by the treatment with sustained release aprotinin abrogates ENaC activation and prevents sodium retention. This model is ideal to study the pathophysiology of proteasuria, i.e., the excretion of active serine proteases that cause ENaC activation by the proteolysis of its &#947;-subunit. This can be regarded as the primary mechanism of ENaC activation and sodium retention in proteinuric kidney disease.

Here, we describe the induction of experimental nephrotic syndrome in 129S1/SvImJ mice by rapid retrobulbar injection of doxorubicin. We also treat nephrotic mice with sustained release pellets containing aprotinin to inhibit urinary serine protease activity and prevent sodium retention.

Nephrotic syndrome is the most extreme manifestation of proteinuric kidney disease and characterized by heavy proteinuria, hypoalbuminemia, and edema due ...

Assessment of Kidney Function in Mouse Models of Glomerular Disease

The use of murine models to mimic human kidney disease is becoming increasingly common. Our research is focused on the assessment of glomerular function in diabetic nephropathy and podocyte-specific VEGF-A knock-out mice; therefore, this protocol describes the full kidney work-up used in our lab to assess these mouse models of glomerular disease, enabling a vast amount of information regarding kidney and glomerular function to be obtained from a single mouse. In comparison to alternative methods presented in the literature to assess glomerular function, the use of the method outlined in this paper enables the glomerular phenotype to be fully evaluated from multiple aspects. By using this method, the researcher can determine the kidney phenotype of the model and assess the mechanism as to why the phenotype develops. This vital information on the mechanism of disease is required when examining potential therapeutic avenues in these models. The methods allow for detailed functional assessment of the glomerular filtration barrier through measurement of the urinary albumin creatinine ratio and individual glomerular water permeability, as well as both structural and ultra-structural examination using the Periodic Acid Schiff stain and electron microscopy. Furthermore, analysis of the genes dysregulated at the mRNA and protein level enables mechanistic analysis of glomerular function. This protocol outlines the generic but adaptable methods that can be applied to all mouse models of glomerular disease.

This protocol describes a full kidney work-up that should be carried out in mouse models of glomerular disease. The methods allow for detailed functional, structural, and mechanistic analysis of glomerular function, which can be applied to all mouse models of glomerular disease.

The use of murine models to mimic human kidney disease is becoming increasingly common. Our research is focused on the assessment of glomerular function ...

Detection of MicroRNA Expression in the Kidneys of Immunoglobulin A Nephropathic Mice

Immunoglobulin A (IgA) nephropathy is a type of primary glomerulonephritis characterized by the abnormal deposition of IgA, leading to the end-stage renal failure. In recent years, the involvement of microRNAs (miRNAs) has been reported in the pathogenesis of IgA nephropathy. However, there is no established method for profiling miRNAs in IgA nephropathy using small animal models. Therefore, we developed a reliable method for analyzing miRNA in the kidney of an IgA mouse model (HIGA mouse). The goal of this protocol is to detect the altered expression levels of miRNAs in the kidneys of HIGA mice when compared with the levels in kidneys of control mice. In brief, this method consists of four steps: 1) obtaining kidney samples from HIGA mice; 2) purifying total RNA from kidney samples; 3) synthesizing complementary DNA from total RNA; and 4) quantitative reverse transcription polymerase chain reaction (qRT-PCR) of miRNAs. Using this method, we successfully detected the expression levels of several miRNAs (miR-155-5p, miR-146a-5p, and miR-21-5p) in the kidneys of HIGA mice. This new method can be applied to other studies profiling miRNAs in IgA nephropathy.

microRNAs are involved in the pathogenesis of IgA nephropathy. We have developed a reliable method for detecting microRNA expression levels in the kidneys of an IgA nephropathy mouse model (HIGA mice). This new method will facilitate to check for miRNAs involvement in IgA nephropathy.

Immunoglobulin A (IgA) nephropathy is a type of primary glomerulonephritis characterized by the abnormal deposition of IgA, leading to the end-stage renal ...

A Modified Two Kidney One Clip Mouse Model of Renin Regulation in Renal Artery Stenosis

Renal artery stenosis is a common condition in patients with coronary or peripheral vascular disease where the renin angiotensin aldosterone system (RAAS) is overactivated. In this context, there is a narrowing of the renal arteries that stimulate an increase in the expression and release of renin, the rate-limiting protease in RAAS. The resulting rise in renin expression is a known driver of renovascular hypertension, frequently associated with kidney injury and end organ damage. Thus, there is a great interest in developing novel treatments for this condition. The molecular and cellular mechanism of renin control in renal artery stenosis is not fully understood and warrants further investigation. To induce renal artery stenosis in mice, a modified 2 kidney 1 clip (2K1C) Goldblatt mouse model was developed. The right kidney was stenosed in wild type mice and sham operated mice were used as control. After renal artery stenosis, we determined renin expression and kidney injury. Kidneys were harvested, and fresh cortices were used to determine protein and mRNA expression of renin. This animal model is reproducible and can be used to study pathophysiological responses, molecular and cellular pathways involved in renovascular hypertension and kidney injury.

A modified 2 kidney 1 clip (2K1C) Goldblatt mouse model was developed using polyurethane tubing to initiate renal artery stenosis, inducing an increase in renin expression and kidney injury. Here, we describe a detailed procedure of preparing and placing the cuff onto the renal artery to generate a reproducible and consistent 2K1C mouse model.

Renal artery stenosis is a common condition in patients with coronary or peripheral vascular disease where the renin angiotensin aldosterone system (RAAS) ...

Using 2-Photon Microscopy to Quantify the Effects of Chronic Unilateral Ureteral Obstruction on Glomerular Processes

Applying novel microscopy methods to suitable animal disease models to explore the dynamic physiology of the kidney remains a challenge. Rats with surface glomeruli provide a unique opportunity to investigate physiological and pathophysiological processes using intravital 2-photon microscopy. Quantification of glomerular capillary blood flow and vasoconstriction and dilatation in response to drugs, permeability, and inflammation are just some of the processes that can be studied. In addition, transgenic rats, i.e., podocytes labeled with fluorescent dyes and other molecular biomarker approaches, provide increased resolution to directly monitor and quantify protein-protein interactions and the effects of specific molecular alterations.
In mice, which lack surface glomeruli after four weeks of age, unilateral ureteral obstruction (UUO) for several weeks has been used to induce surface glomeruli. As this induction model does not allow for baseline studies, we quantified the effects of UUO on glomerular processes in the UUO model in Munich Wistar Fr&#246;mter (MWF) rats, which have surface glomeruli under physiologic conditions. The UUO model for five weeks or more induced significant alterations to gross renal morphology, the peritubular and glomerular microvasculature, as well as the structure and function of tubular epithelia. Glomerular and peritubular red blood cell (RBC) flow decreased significantly (p &#60; 0.01), probably due to the significant increase in the adherence of white blood cells (WBCs) within glomerular and peritubular capillaries. The glomerular sieving coefficient of albumin increased from 0.015 &#177; 0.002 in untreated MWFs to 0.045 &#177; 0.05 in 5-week-old UUO MWF rats. Twelve weeks of UUO resulted in further increases in surface glomerular density and glomerular sieving coefficient (GSC) for albumin. Fluorescent albumin filtered across the glomeruli was not reabsorbed by the proximal tubules. These data suggest that using UUO to induce surface glomeruli limits the ability to study and interpret normal glomerular processes and disease alterations.

Here, we present a protocol using 2-photon microscopy in Munich Wistar Fromter rats with surface glomeruli to quantifythe effects of prolonged ureteral obstruction on glomerular dynamics and function.

Applying novel microscopy methods to suitable animal disease models to explore the dynamic physiology of the kidney remains a challenge. Rats with surface ...

Detecting Migration and Infiltration of Neutrophils in Mice

Neutrophils are a major member of the innate immune system and play pivotal roles in host defense against pathogens and pathologic inflammatory reactions. Neutrophils can be recruited to inflammation sites via the guidance of cytokines and chemokines. Overwhelming infiltration of neutrophils can lead to indiscriminate tissue damage, such as in rheumatoid arthritis (RA). Neutrophils isolated from peritoneal exudate respond to a defined chemoattractant, N-formyl-Met-Leu-Phe (fMLP), in vitro in Transwell or Zigmond chamber assays. The air pouch experiment can be used to evaluate the chemotaxis of neutrophils towards lipopolysaccharide (LPS) in vivo. The adjuvant-induced arthritis (AA) mouse model is frequently used in RA research, and immunohistochemical staining of joint sections with anti-myeloperoxidase (MPO) or anti-neutrophil elastase (NE) antibodies is a well-established method to measure neutrophil infiltration. These methods can be used to discover promising therapies targeting neutrophil migration.

Here, we present three methods to assess neutrophil migration and infiltration both in vivo and in vitro. These methods can be used to discover promising therapeutics targeting neutrophil migration.

Neutrophils are a major member of the innate immune system and play pivotal roles in host defense against pathogens and pathologic inflammatory reactions. ...

Biology

Unilateral Ureteral Obstruction Model for Investigating Kidney Interstitial Fibrosis

Kidney fibrosis is the final pathological outcome of progressive chronic kidney disease (CKD). The unilateral ureteral obstruction (UUO) model is widely used to elucidate the molecular and cellular mechanisms underlying kidney interstitial fibrosis and to identify potential therapeutic targets. This model is established in mice through surgical ligation of a unilateral ureter, a procedure that is relatively straightforward and easy to perform. However, the UUO mouse model is known to exhibit significant variability and inconsistency, influenced by factors such as mouse strain, age, sex, anesthesia type, duration of surgery, body temperature during the procedure, the operator's surgical skills, feeding conditions, and the overall health status of the mice. Variations in surgical techniques, suture placement, and the duration of obstruction contribute to the variability in outcomes. Additionally, inconsistent sampling of obstructed kidneys further increases variability in the assessment of kidney fibrosis. This study outlines the process of developing the UUO mouse model and evaluating interstitial fibrosis, discusses the technical challenges contributing to the model's unpredictability, and proposes potential solutions. These insights aim to establish a more standardized and universally applicable approach for investigating kidney fibrosis.

This protocol describes a method for inducing unilateral ureteral obstruction (UUO) in mice to study the progression of tissue fibrosis in obstructive nephropathy. It includes surgical procedures, post-operative care, and methods for fibrosis assessment.

Kidney fibrosis is the final pathological outcome of progressive chronic kidney disease (CKD). The unilateral ureteral obstruction (UUO) model is widely ...

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