Name: an ex vivo tissue culture model for fibrovascular complications in proliferative diabetic retinopathy
Uploaded: 2019-01-25T15:00:00.000+00:00
Duration: 8 min 10 s
Description: Watch this Scientific Journal Video about An Ex Vivo Tissue Culture Model for Fibrovascular Complications in Proliferative Diabetic Retinopathy at JoVE.com

The authors are most grateful to the medical and surgical retina colleagues, nurses and whole staff of the Diabetic Unit and Vitreoretinal Surgery Unit at the Department of Ophthalmology, Helsinki University Hospital for actively participating in the recruitment of patients. We thank Biomedicum Molecular Imaging Unit for imaging facilities. We thank Anastasiya Chernenko for excellent technical assistance. This study was supported by grants from the Academy of Finland (KL), University of Helsinki (KL), Sigrid Juselius Foundation (KL), K. Albin Johansson Foundation (KL), Finnish Cancer Institute (KL), Karolinska Institutet (KL), Finnish Eye Foundation (SL), Eye and Tissue Bank Foundation (SL), Mary and Georg C. Ehrnrooth Foundation (SL), and HUCH Clinical Research Grants (TYH2018127 after TYH2016230, SL), Diabetes Research Foundation (SL, KL, AK, EG) as well as the Doctoral Programme in Biomedicine (EG).

This research was approved by the Institutional Review Board and Ethical committee of Helsinki University Hospital. Signed informed consent was obtained from each patient.
1. Preparation of Solutions, Media and Equipment
<ol>
	<li>Prepare the following equipment prior to collection of the fibrovascular tissue (FT) to ensure rapid processing.
	<ol>
		<li>Sterile-autoclave two microdissection tweezers.</li>
		<li>Prepare 1x phosphate-buffered saline (PBS) by dissolving 1 pre-weighed PBS tablet (0.14 M NaCl, 0.0027 M KCl, 0.010 M PO4-3) in 900 mL of deionized water and stir to dissolve. Adjust the water volume up to 1 L and sterile-autoclave the ready solution. Store at RT.</li>
		<li>Gather the above mentioned solution and equipment in a basket, together with a single-use sterile scalpel, a sterile 6-cm cell culture dish and five sterile 12-well cell culture plates.</li>
	</ol>
	</li>
	<li>Prepare a 6 mg/mL fibrinogen solution in Hanks Balanced Salt Solution (HBSS) by dissolving 30 mg of plasminogen-depleted human fibrinogen into 5 mL of HBSS, using a 50 mL tube immersed into a water bath at 37 &#176;C, for at least 1 h. 
	NOTE: This solution can be kept in the water bath (37 &#176;C) for 7 h&#160;(maximum 10 h) before use.</li>
	<li>Prepare the ex vivo culture medium by adding 5% fetal calf serum (FCS) or 5% human serum, 0.4% endothelial cell growth supplement, 10 ng/mL recombinant human epidermal growth factor, 1 &#956;g/mL hydrocortisone, and 50 &#956;g/mL gentamycin to commercially available endothelial cell growth medium and keep in water bath at 37 &#176;C until use. Store at 4 &#176;C for up to a month.</li>
</ol>
2. Fibrovascular Tissue Dissection
<ol>
	<li>Collect the fibrovascular tissue (FT) that has been excised from human subjects undergoing trans-conjunctival microincision vitreoretinal surgery, by 23 or 20 gauge three-port pars plana vitrectomy as part of the vitreoretinal surgical management of PDR. 
	NOTE: The FT is excised using segmentation and delamination, cut if needed with microscissors, and removed from the vitreous cavity with intraocular end-gripping microforceps by experienced vitreoretinal surgeon. Extreme care needs to be taken to remove intact, undamaged FT without causing damage to ocular structures including the optic nerve or temporal vascular arcade where the pathological neovascular tissue is most commonly located. The size of the excised tissue is variable, usually ranging between 3 and 50 mm2.</li>
	<li>Keep the FT in a 6 cm cell culture dish or 1.5 mL tube containing 1 mL of sterile PBS placed on wet ice, and transfer it immediately to research laboratory for processing. 
	NOTE: It is essential that the research unit (lab facilities) are physically close to the hospital operating room (OR) to minimize the transfer times of the small excised FT. In this case the transfer takes less than 5 minutes and the explants are embedded within fibrin usually in 1 - 1.5 h&#160;(maximum 2 h) after surgical removal. The impact of longer transfer times on the 3D culture would need to be tested.</li>
	<li>Place the FT in a 6-cm cell culture dish containing 1 mL of PBS at room temperature (RT, 25 &#176;C) and acquire images of the tissue using an inverted epifluorescence microscope with a 5x objective. 
	NOTE: Images are acquired for qualitative assessment and documentation. It will be possible to observe the tissue size, density and general composition (e.g., vascular structures).</li>
	<li>Cut the FT into ~1 mm2 pieces under an upright dissection stereomicroscope, using a sterile scalpel and microdissection tweezers. Hold the tissue, well submerged in PBS, in place using a microdissection tweezer, and perform clear cuts using a sterile scalpel. Avoid tearing FT, as this would alter the native fibrovascular structures.</li>
	<li>Place each individual piece into a well of a 12-well cell culture plate containing 1 mL of sterile PBS. 
	NOTE: If needed, gently spread the FT onto the plate, using microdissection tweezers, prior to performing cuts.</li>
</ol>
3. Casting Upright Fibrin Gel Droplets for the Characterization of Native FT and Ex Vivo Culture
<ol>
	<li>Sterile-filter the ready fibrinogen solution prepared in step 1.2 with a 0.22 &#956;m filter mounted into a 10 mL syringe.</li>
	<li>Prepare aliquots of the fibrinogen solution (25 &#956;L per 1.5 mL tube) and keep at RT. Prepare an aliquot for fibrin gel/every FT piece obtained after the dissection, and a couple of extra aliquots for testing the fibrin gel formation.</li>
	<li>Prepare a solution of HBSS containing 4 units/mL of thrombin and 400 &#956;g/mL of aprotinin, called hereafter TA solution, and keep at RT. Prepare as much TA solution as needed, depending on the number of pieces obtained after dissection (25 &#956;L of TA solution is used for each FT/fibrin gel), and an extra amount (e.g., 250 &#956;L) for testing the fibrin gel formation and ensuring that enough solution is available throughout casting of the fibrin gel droplets. 
	NOTE: Thrombin is required for fibrin polymerization while aprotinin is added to prevent degradation of the fibrin gel by cellular proteases expressed by the FTs13,14.</li>
	<li>Test the timing of fibrin gel formation: add 25 &#956;L of TA solution to the aliquoted 25 &#956;L fibrinogen solution prepared in step 3.2 and, using another pipette set to 50 &#956;L, mix in the tube by pipetting and dispense into a 6 cm cell culture dish, forming an upright droplet. 
	NOTE: The fibrin gel formation should take place in ~1 min. If this takes over 1.5 min, the concentration of thrombin in the TA solution prepared in step 3.3 can be increased by adding more thrombin stock solution. One tenth of the initially used volume of thrombin stock solution can be added, repeatedly, until the fibrin gel formation occurs within 1.5 min. The time of fibrin gel formation is critical for the three dimensionality of the culture, as quick gel formation (within 1.5 minutes) prevents the FT piece from sinking to the bottom of the fibrin gel, and thus coming in contact with the 2D plastic surface of the cell culture plate, which can lead to 2D cell adhesion and outgrowth.</li>
	<li>Place one FT piece at the center of one well of a 24-well plate using a sterile tweezer and remove any excess PBS by pipetting with a 0.5-10 &#956;L pipette to avoid suction force on the FT. In the case the tissue sticks to the tweezer, use an additional tweezer to aid the placement of the tissue piece on the plate. 
	NOTE: FT/fibrin gels can also be cast on 48-well plate to reduce the usage of reagents. However, this is more challenging as the space is more limited and fibrin will spread if it comes into contact with the well wall.</li>
	<li>Add 25 &#956;L of TA solution to the 25 &#956;L fibrinogen solution aliquoted in step 3.2, and using another pipette set to 50 &#956;L mix in the tube by pipetting. Dispense onto the FT piece placed on the plate well, and pipette up and down 2- 3 times in order to include the FT piece within the upright droplet, providing a 3D surrounding matrix to the FT. 
	NOTE: Ensure that the FT is not aspirated during pipetting and that no air bubbles are formed. Ensure also that mixing, dispensation and pipetting are performed quickly as the fibrin gel will form within 1.5 min, as tested in step 3.4. If casting fibrin gels on 48-well plate, use instead 20 &#956;L of fibrinogen solution and 20 &#956;L of TA solution.</li>
	<li>Repeat steps 3.5 and 3.6 for all the FT pieces.</li>
	<li>Allow the fibrin gels to solidify by incubating the plates in a cell culture incubator at 37 &#176;C in a humidified atmosphere with 5% CO2.</li>
	<li>After 0.5-1 h, check that the fibrin gel is completely formed by carefully tilting the plate. Proceed to step 3.10 when the gel does not move as the plate is tilted, indicating that the fibrin gel formation is complete.</li>
	<li>Overlay the FT/fibrin gels with ex vivo culture medium (600 &#956;L/well in 24-well plate or 300 &#956;L/well in 48-well plate) supplemented with 100 &#956;g/mL aprotinin. Pipette the medium gently by drop-wise dispensation. 
	NOTE: Here, aprotinin is used to prevent degradation of the fibrin gel by cellular proteases expressed by the FTs13,14. The ex vivo culture medium can additionally be supplemented with recombinant growth factors, such as VEGFA, VEGFC, bFGF, TGF&#946; (see Table of Materials)11.</li>
	<li>Place the FT ex vivo culture plate back into the 37 &#176;C, 5% CO2 cell culture incubator and culture for the desired time period (e.g., 2- 18 days, longer culture periods will need to be tested). Replace 50% of the medium with fresh ex vivo culture medium every three days.</li>
</ol>
4. &#8220;In Matrix&#8221; Imaging
<ol>
	<li>Acquire images of the FT ex vivo cultures on the same day (day 0) and at set intervals (e.g., every other day), using an inverted epifluorescence microscope, in order to follow the 3D growth. 
	NOTE: The images obtained can be used for the quantification of the FT outgrowth as the total length of two perpendicular diameters across the explant11.</li>
</ol>
5. Native FT and Ex Vivo Culture End-Point
NOTE: The FT/fibrin gels can be cultured ex vivo for the desired time period (FT ex vivo cultures) or fixed on the same day (native FT) for native FT characterization11.
<ol>
	<li>Fix the native FT or the FT ex vivo cultures by replacing the culture medium with 1 mL/well of 4% paraformaldehyde in PBS solution, for 1 h&#160;at RT. For the native FT/fibrin gels, fix 0.5-1 h after addition of the ex vivo culture medium (if the fibrin gels have not been soaked in medium, fixation will damage them). 
	NOTE: Perform this step in fume hood as paraformaldehyde is corrosive, toxic and carcinogenic.</li>
	<li>Rinse the FT/fibrin gels with three 5 min washes in PBS (2 mL/well).</li>
	<li>Replace the PBS with 2 mL/well of PBS containing 0.02% sodium azide and store the fixed fibrin gels at 4 &#176;C until further processing. Seal the plates with paraffin film to ensure that the FT/fibrin gels do not dry in storage. 
	NOTE: Perform this step in fume hood as sodium azide is toxic.</li>
</ol>
6. Whole-Mount Immunofluorescence Staining
NOTE: This protocol lasts 5 days and can be interrupted with overnight incubations where indicated. Do not let the fibrin gels dry at any point. All steps are performed at RT unless otherwise indicated.
<ol>
	<li>Prepare the following solutions before starting the staining protocol.
	<ol>
		<li>Post-fixation solution: prepare 50:50 acetone:methanol solution by mixing equal amounts of acetone and methanol (e.g., 50 mL). Store at -20 &#176;C. Prepare this solution latest on the day before the staining. This solution can be stored back at -20 &#176;C and be used for subsequent stainings. 
		NOTE: Prepare this solution in fume hood as acetone and methanol are flammable and hazardous to health.</li>
		<li>Blocking solution: prepare a 15% fetal bovine serum (FBS), 0.3% octyl phenol ethoxylate solution in PBS by first adding 15% FBS to PBS. Add octyl phenol ethoxylate and stir to dissolve. Store at 4 &#176;C. 
		NOTE: This solution can be prepared in large amount in advance, stored in 15 mL aliquotes at -20 &#176;C and thawed before use, on the day when the staining protocol is started. Use a freshly prepared or freshly thawed aliquote for each staining protocol.</li>
		<li>Washing solution: Prepare 1 L of PBS supplemented with 0.45% octyl phenol ethoxylate by adding 4.5 mL of octyl phenol ethoxylate to 995.5 mL of PBS. Stir to dissolve. Store at RT.</li>
	</ol>
	</li>
	<li>Lift the droplets carefully from the plate by using a stainless steel square-edged spatula. Detach the droplet first from the edges before lifting the center, and transfer to a well of 12-well plate containing 1 mL of PBS. 
	NOTE: Perform post-fixation, washes and blocking steps in this plate format.</li>
	<li>Post-fix the droplets with 1 mL of ice-cold 50:50 acetone:methanol solution for ~1 min (the border of the droplets will turn white). 
	NOTE: Perform this step in fume hood as acetone and methanol are hazardous to health.</li>
	<li>Rinse with 3 - 5 washes in 2 mL of PBS (the droplets will sink in the PBS solution when rehydration is complete). 
	NOTE: Avoid touching the droplets with the pipette tip as, after post-fixation, they are sticky to plastic. Throughout the protocol, avoid aspirating post-fix, antibody, blocking and washing solutions by suction, as this may damage or completely destroy the droplets. Instead, tilt the plate and carefully remove solutions using a 500-5,000 &#956;L pipette.</li>
	<li>Centrifuge the blocking solution for 15 min at 21,000 x g and 4 &#176;C in order to remove debris. 
	NOTE: The solution can be aliquoted in 1.5 mL tubes for centrifugation. The unused solution can be stored at 4 &#176;C and used for all relevant subsequent steps.</li>
	<li>Incubate the droplets in 500 &#956;L blocking solution for 2 h at RT. 
	NOTE: To reduce the volume of blocking solution used, the plate can be tilted on a support and as little as 300 &#956;L of solution/droplet can be used.</li>
	<li>Prepare the primary antibody mixture (at least 30 &#956;L/droplet) at appropriate dilution in blocking solution and centrifuge for 15 min at 21,000 x g and 4 &#176;C.</li>
	<li>Transfer the droplets into round (U)-bottom 96-well plate by using a round-edged spatula, and incubate with at least 30 &#956;L/droplet of the primary antibody mixture overnight at 4 &#176;C.</li>
	<li>On the following day, transfer the droplets into 12-well plate containing 2 mL of washing solution/well, rinse with three 5 min washes first and then with nine 30 min washes. Leave the last wash (2 mL) overnight at 4 &#176;C.</li>
	<li>On the following day, rinse three times with PBS and transfer the droplets into round (U)-bottom 96-well plate.</li>
	<li>During the washes, prepare the appropriate fluorophore-conjugated secondary antibody mixture (diluted 1:500, at least 30 &#956;L/droplet) in blocking solution and centrifuge for 15 min at 21,000 x g and 4 &#176;C.</li>
	<li>Transfer the droplets into a round (U)-bottom 96-well plate by using a round-edged spatula and incubate with at least 30 &#956;L of the secondary antibody mixture, for 4 h&#160;at RT, protected from light. 
	NOTE: Perform all subsequent incubations and washing steps protected from light.</li>
	<li>Transfer the droplets into 12-well plate containing 2 mL of washing solution/well using a round-edged spatula, rinse with three 5 min washes first and then with four 30 min washes. Leave the last wash (2 mL) overnight at 4 &#176;C.</li>
	<li>On the following day, rinse the gels with five 30 min washes and then three times with PBS. Leave the last wash (2 mL) overnight at 4 &#176;C.</li>
	<li>On the following day, transfer the droplets into a round (U)-bottom 96-well plate by using a round-edged spatula and counterstain nuclei by incubating with 10 &#956;g/mL Hoechst nuclear stain (at least 30 &#956;L/droplet) for 30 minutes at RT. 
	NOTE: Mounting medium supplemented with 4&#39;,6-diamidino-2-phenylindole (DAPI) for nuclei counterstaining can alternatively be used. In which case, this step and step 6.16 are skipped, proceeding directly to step 6.17.</li>
	<li>Transfer the droplets into 12-well plate containing 2 mL of PBS/well using a round-edged spatula and rinse three times with PBS.</li>
	<li>Mount the droplets onto microscope slide as follows:
	<ol>
		<li>Apply a narrow layer of quick-hardening mounting medium on the edges of a square-shaped 22 mm x 22 mm coverglass and let dry for ~1 minute. Perform this step for each drop individually, to avoid excessive hardening of the mounting medium. 
		NOTE: Perform this step in fume hood as the quick-hardening mounting medium is hazardous to health.</li>
		<li>Rinse the droplet by dipping in a well of a 12-well plate containing 2 mL of deionized water and transfer onto a microscope slide, using a round-edged spatula. Remove excess water by using a small piece of absorbent paper.</li>
		<li>Dispense 15 &#956;L of non-hardening antifade mounting medium onto the droplet. 
		NOTE: Alternatively, if Hoechst nuclear stain has not been used, mounting medium containing 4&#39;,6-diamidino-2-phenylindole (DAPI) can be used.</li>
		<li>Gently position the cover glass, with the quick-hardening mounting medium facing the microscopic slide, over the droplet and let settle. 
		NOTE: The quick-hardening medium will stick to the microscopic slide and keep the droplet in place.</li>
	</ol>
	</li>
	<li>Repeat step 6.17&#160;for all droplets. Mount two droplets on each microscope slide.</li>
	<li>Let the slides air-dry at RT for ~2 h and store at 4 &#176;C overnight. Ensure that the slides are positioned horizontally and protected from light.</li>
	<li>Image the stained native or end-point FT ex vivo cultures using a confocal microscope or an upright epifluorescence microscope equipped with an optical sectioning function and 20x or 40x objective. Use tile function to capture a greater area of the tissue at once.</li>
</ol>

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N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Structural+macromolecules+and+supramolecular+organisation+of+the+vitreous+gel.">Structural macromolecules and supramolecular organisation of the vitreous gel.</a> Progress in Retinal and Eye Research. 19 (3), 323-344 (2000).</li><li>Marmorstein, A. D., Marmorstein, L. Y. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+challenge+of+modeling+macular+degeneration+in+mice.">The challenge of modeling macular degeneration in mice.</a> Trends in Genetics. 23 (5), 225-231 (2007).</li><li>Kim, L. A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Characterization+of+cells+from+patient-derived+fibrovascular+membranes+in+proliferative+diabetic+retinopathy.">Characterization of cells from patient-derived fibrovascular membranes in proliferative diabetic retinopathy.</a> Molecular Vision. 21, 673-687 (2015).</li><li>Avery, R. L., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Intravitreal+bevacizumab+(Avastin)+in+the+treatment+of+proliferative+diabetic+retinopathy.">Intravitreal bevacizumab (Avastin) in the treatment of proliferative diabetic retinopathy.</a> Ophthalmology. 113 (10), e1691-e1615 (2006).</li><li>Zhao, L. Q., Zhu, H., Zhao, P. Q., Hu, Y. Q. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+systematic+review+and+meta-analysis+of+clinical+outcomes+of+vitrectomy+with+or+without+intravitreal+bevacizumab+pretreatment+for+severe+diabetic+retinopathy.">A systematic review and meta-analysis of clinical outcomes of vitrectomy with or without intravitreal bevacizumab pretreatment for severe diabetic retinopathy.</a> The British Journal of Ophthalmology. 95 (9), 1216-1222 (2011).</li><li>Carrion, B., Janson, I. A., Kong, Y. P., Putnam, A. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+safe+and+efficient+method+to+retrieve+mesenchymal+stem+cells+from+three-dimensional+fibrin+gels.">A safe and efficient method to retrieve mesenchymal stem cells from three-dimensional fibrin gels.</a> Tissue Engineering. Part C, Methods. 20 (3), 252-263 (2014).</li></ol>

The authors have nothing to disclose.

Considering the importance of relevant tissue microenvironment for reliable functional cell and molecular mechanistic results, it is imperative to find appropriate experimental models that provide this tissue environment. The herein described ex vivo PDR culture model for the fibrin-embedded FTs allows the investigation of the mechanisms of PDR pathophysiology in the native, complex and multicellular context of the PDR clinical samples.
Critical steps within the protocol are the proper fibrin gel formation, the positioning of the FT and adequate washing during the staining. Since fibrin gel formation depends mostly on the thrombin activity, affected by the concentration and temperature, the amount of thrombin needs to be adjusted for every batch of fibrin gel preparation. Fibrin gel formation should be quick enough to prevent 2D growth of the FT explants but also slow enough to allow positioning of the FT to the center of the droplets vertically and horizontally. In the case the FT happens to locate at the edge of the droplet, additional pipetting could aid the placement of the FT to the center. FTs that still remain at the edge of the droplets or that grow in 2D will need to be excluded. Adequate washing during staining and avoiding drying of the droplets are in turn critical in order to optimize staining and minimize background signal. Transfer times may also be critical. We have embedded the FTs up to two hours after vitrectomy and this did not affect the ex vivo growth. The impact of longer transfer times on the culture success would need to be tested.
This protocol could be modified by using alternative matrices for FT embedding. In vivo, the PDR neovessels grow towards the vitreous cortex rich in collagen23. However, upon vascular leakage serum components, including fibrinogen, dissolve into vitreous in close proximity to the vessels whereby the fibrotic response is initiated. Therefore, the in vitro fibrin clot was utilized here for the ex vivo culture in order to typify the provisional ECM formed in the inflamed fibrotic milieu of PDR15,21,22. Alternatively, the fibrin clots could be supplemented with laminin and fibronectin to alter the stability of sprouting capillaries, or the explants could be embedded within type I collagen and other mixed matrices to typify the most fibrotic microenvironments in neovascular tissues. These matrices are generally suitable for 3D culture and whole-mount immunofluorescence but their effects on the PDR FTs remain to be tested and considerations on the timing of 3D matrix formation will need to be made in order to stay within the limits for preventing 2D growth18,19. When the physical proximity of the research unit to the hospital represents a limitation, longer transfer times could be compensated with team work; TA solution preparation, fibrinogen sterile-filtration and fibrin gel formation testing can be performed during FT transfer. If the fibrin gels do not form even after 1 hour, a problem with the fibrinogen or TA solution preparation might have occurred. In this case, the FT/fibrin gels cannot be used.
Limitations of this approach, as with every ex vivo approach, are the variable quality of primary tissue specimen across individuals as well as intra-patient and inter-patient tissue heterogeneity. In the case of diabetic patients, part of this variability includes the extent of vascularization and fibrosis which depend on numerous factors like duration of the disease, metabolic condition, genetic/epigenetic factors, type of diabetes and systemic therapy. The size of the surgical PDR FT recovered is also a limiting factor in determining the number of conditions that can be investigated for each specimen. While providing reciprocal spatial information, whole-mount immunofluorescence allows the investigation of only a limited amount of features/markers per droplet. As a compromise, the fibrin droplets can alternatively be embedded in paraffin, cut to thin sections and analysed by immunohistochemistry.
Existing diabetic mouse models develop many features of early stage DR but fail to comprehensively recapitulate the progressive changes occurring in human PDR, thus hindering the studies of the PDR disease mechanisms7,8. Moreover, the murine eye is fundamentally different from the human eye, in that it lacks the macula, further emphasizing the importance of studying the human disease24. The surgical PDR FTs have previously either been discarded, or used for paraffin sections, transmission electron microscopy, serial block face-scanning electron microscopy, bulk RNA sequencing or 2D culture of dissociated cells3,25. The herein described model allows the 3D characterization of this precious surgical material, as well as the investigation of PDR pathophysiology in the native diseased tissue microenvironment. When combined with the use of vitreous fluid, this model also allows the investigation of the contribution of both the cellular and acellular PDR microenvironment. Since the cultures respond efficiently to growth factors detected in the vitreous, such as VEGFA, bFGF, VEGFC and TGF&#946;, thus recapitulating features of PDR pathophysiology, this PDR ex vivo culture model is amenable for testing or developing new PDR treatments11. In this model, anti-VEGFA prevented capillary sprouting and induced signs of capillary regression, responses that are consistent with the expected clinical outcomes of anti-VEGFA treatment26,27. Therefore, this model can also be used for better understanding the effects of current therapies, including anti-VEGFA and corticosteroid treatments.
With live-cell imaging instrumentation, the herein described ex vivo culture model could be subjected to time-lapse microscopy to allow real-time investigation of processes such as vascular regression, sprouting and cellular plasticity. When combined with in vitro and in vivo models, as well as clinical data, this ex vivo PDR model will help in investigating patient responses based on particular sets of identifying markers, a step closer to the avenue for personalized medicine. Identifying patient-specific responses and/or response-specific markers is especially relevant in the case of PDR, which is a multifactorial disease with a complex interplay of microvascular, neurodegenerative, metabolic, genetic/epigenetic, immunological, and inflammation-related factors, thus requiring increasingly multidisciplinary efforts for development of improved therapeutic targeting and disease management. Besides whole-mount immunofluorescence, the ex vivo cultured FTs could also be retrieved from the fibrin by&#160;plasmin/nattokinase treatment and subjected to transcriptomic and proteomic analyses28. The suitability of the herein described model for ex vivo studies of fibrovascular tissues developed in other ocular conditions, such as in severe cases of sickle cell retinopathy, could also be explored in the future.

DR is a serious ocular complication of diabetes, a disease that has reached enormous proportions in the last three decades1. Twenty years after diagnosis, virtually every patient with type 1 diabetes and 60% of patients with type 2 diabetes present signs of retinopathy, making diabetes per se one of the leading causes of blindness in working age adults2. According to the level of microvascular degeneration and ischemic damage, DR is classified into non-proliferative DR (non-PDR) and proliferative DR (PDR). The end-stage disease, PDR, is characterized by ischemia- and inflammation-induced neovascularization and fibrotic responses at the vitreoretinal interface. In untreated conditions, these processes will lead to blindness due to vitreous hemorrhage, retinal fibrosis, tractional retinal detachment, and neovascular glaucoma3,4. Despite recent advances, current treatment options target only DR stages, including diabetic macular edema and PDR, when retinal damage has already ensued. Moreover, a great proportion of DR patients does not benefit from current treatment armamentarium, indicating an urgent need for improved therapies4,5,6.
Multiple other in vivo disease/developmental models and diabetic animal models have been developed to date, but none of them recapitulates the full range of pathologic features observed in human PDR7,8. Moreover, increasing evidence indicates that treatment responses are tightly connected to the ECM composition as well as the spatial arrangement and interaction between the cellular and acellular microenvironment9. We, therefore, set out to develop a clinically relevant model of human PDR by utilizing the FT pathological material that is commonly excised from eyes undergoing vitrectomy as part of the surgical management of PDR10.
This manuscript describes the protocol for the 3D ex vivo culture and characterization of the surgically-excised, PDR patient-derived pathological FT. The method described here has been used in a recent publication that demonstrated successful deconstruction of the native 3D PDR tissue landscape, and recapitulation of features of PDR pathophysiology including angiogenic and fibrotic responses of the abnormal vascular structures11. This model also revealed novel features that cannot be easily appreciated from thin histological sections, such as spatially confined apoptosis and proliferation as well as vascular islet formation11. Vitreous fluid has been successfully used by others on 3D endothelial spheroid cultures to evaluate its angiogenic potential and the efficacy of angiostatic molecules12. When combined with an in vitro 3D lymphatic endothelial cell (LEC) spheroid sprouting assay using PDR vitreous as stimulant, our model revealed the contribution of both soluble vitreal factors as well as local cues within the neovascular tissue to the as yet poorly understood LEC involvement in PDR pathophysiology3,11. In the management of PDR, vitreoretinal surgery is a routinely performed yet challenging procedure. As surgical instrumentations and techniques are seeing continuous advancement and sophistication, timely and conservative removal of fibrovascular proliferative specimen not only improves vision outcome but also provides invaluable tissue material for the investigation of PDR pathophysiology and treatment responses in the complex translational aspects of the live human tissue microenvironment.

<table><tbody><tr><td>&lt;strong&gt;Material&lt;/strong&gt;</td><td></td><td></td><td></td></tr><tr><td>Microforceps</td><td>Medicon</td><td>07.60.03</td><td>Used for handling the FTs</td></tr><tr><td>Disposable Scalpels - Sterile</td><td>Swann-Morton</td><td>0513</td><td>Used for FT dissection</td></tr><tr><td>Culture dish, vented, 28 ml (60mm)</td><td>Greiner Bio-One</td><td>391-3210</td><td>Used for dissection and for testing fibrin gel formation</td></tr><tr><td>Cell culture plates, 12-well</td><td>Greiner Bio-One</td><td>392-0049</td><td>Used for FT dissection and whole-mount immunofluorescence</td></tr><tr><td>Reagent/centrifuge tube with screw cap, 15 mL</td><td>Greiner Bio-One</td><td>391-3477</td><td></td></tr><tr><td>Reagent/centrifuge tube with screw cap, 50 mL</td><td>Greiner Bio-One</td><td>525-0384</td><td></td></tr><tr><td>Millex-GV Syringe Filter Unit, 0.22&amp;nbsp;&amp;micro;m, PVDF</td><td>Millipore</td><td>SLGV033RS</td><td>Used to sterile-filter the fibrinogen solution</td></tr><tr><td>Syringe, 10 mL</td><td>Braun</td><td>4606108V</td><td>Used to sterile-filter the fibrinogen solution</td></tr><tr><td>Polypropylene Microcentrifuge Tubes, 1.5 mL</td><td>Fisher</td><td>FB74031</td><td></td></tr><tr><td>Cell-Culture Treated Multidishes, 24-well</td><td>Nunc</td><td>142475</td><td>Used for casting the FT/fibrin gels for native FT characterization and &lt;em&gt;ex vivo&lt;/em&gt; culture</td></tr><tr><td>Cell culture plates, 96-well, U-bottom</td><td>Greiner Bio-One</td><td>392-0019</td><td>Used for whole-mount immunofluorescence</td></tr><tr><td>Round/Flat Spatulas, Stainless Steel</td><td>VWR</td><td>82027-528</td><td>Used for whole-mount immunofluorescence</td></tr><tr><td>Coverslips 22x22mm #1</td><td>Menzel/Fisher</td><td>15727582</td><td>Used for mounting</td></tr><tr><td>Microscope slides</td><td>Fisher</td><td>Kindler K102</td><td>Used for mounting</td></tr><tr><td>Absorbent paper</td><td>VWR</td><td>115-0202</td><td>Used for mounting</td></tr><tr><td>&lt;strong&gt;Name&lt;/strong&gt;</td><td>&lt;strong&gt;Company&lt;/strong&gt;</td><td>&lt;strong&gt;Catalog Number&lt;/strong&gt;</td><td>&lt;strong&gt;Comments&lt;/strong&gt;</td></tr><tr><td>&lt;strong&gt;Reagents&lt;/strong&gt;</td><td></td><td></td><td></td></tr><tr><td>PBS tablets</td><td>Medicago</td><td>09-9400-100</td><td>Used for preparing 1x PBS</td></tr><tr><td>Fibrinogen, Plasminogen-Depleted, Human Plasma</td><td>Calbiochem</td><td>341578</td><td></td></tr><tr><td>Hanks Balanced Salt Solution</td><td>Sigma-Aldrich</td><td>H9394-500ML</td><td>Used for preparing the fibrinogen and TA solution</td></tr><tr><td>Fetal bovine serum</td><td>Gibco</td><td>10270106</td><td>Used for preparing the blocking solution</td></tr><tr><td>Human Serum</td><td>Sigma-Aldrich</td><td>H4522</td><td>Aliquoted in -20 &amp;deg;C, thaw before preparing the &lt;em&gt;ex vivo&lt;/em&gt; culture media</td></tr><tr><td>Gentamicin Sulfate 10mg/ml</td><td>Biowest</td><td>L0011-100</td><td></td></tr><tr><td>Endothelial cell media MV Kit</td><td>Promocell</td><td>C-22120</td><td>Contains 500 ml of Endothelial Cell Growth Medium MV, 25 mL of fetal calf serum, 2 mL of endothelial cell growth supplement,&amp;nbsp; 500 &amp;mu;L of recombinant human epidermal growth factor (10 &amp;mu;g/ mL) and 500 &amp;mu;L of hydrocortisone (1 g/ mL)</td></tr><tr><td>Sodium azide</td><td>Sigma-Aldrich</td><td>S2002</td><td>Used for storage of the native and &lt;em&gt;ex vivo&lt;/em&gt; cultured FTs. TOXIC: wear protective gloves and/or clothing, and eye and/or face protection. Use in fume hood.</td></tr><tr><td>Acetone</td><td>Sigma-Aldrich</td><td>32201-2.5L-M</td><td>Used to prepare the post-fixation solution. HARMFUL: wear protective gloves and/or clothing. Use in fume hood.</td></tr><tr><td>Methanol</td><td>Sigma-Aldrich</td><td>32213</td><td>Used to prepare the post-fixation solution. TOXIC: wear protective gloves and/or clothing. Use in fume hood.</td></tr><tr><td>Triton X-100 (octyl phenol ethoxylate)</td><td>Sigma-Aldrich</td><td>T9284</td><td>Used for whole-mount immunofluorescence. HARMFUL: wear protective gloves and/or clothing.</td></tr><tr><td>Hoechst 33342, 20mM</td><td>Life Technologies</td><td>62249</td><td>For nuclei counterstaining. HARMFUL: wear protective gloves and/or clothing, and eye and/or face protection.</td></tr><tr><td>VECTASHIELD Antifade Mounting Medium</td><td>Vector Laboratories</td><td>H-1000</td><td>Wear protective gloves and/or clothing, and eye protection. Use in fume hood.</td></tr><tr><td>VECTASHIELD Antifade Mounting Medium with DAPI</td><td>Vector Laboratories</td><td>H-1200</td><td>Mounting medium with nuclei counterstaining. Wear protective gloves and/or clothing, and eye protection. Use in fume hood.</td></tr><tr><td>Eukitt Quick-hardening mounting medium</td><td>Sigma-Aldrich</td><td>03989-100ml</td><td>TOXIC: Wear protective gloves and/or clothing, and eye protection. Use in fume hood.</td></tr><tr><td>Thrombin from bovine plasma, lyophilized powder</td><td>Sigma-Aldrich</td><td>T9549-500UN&amp;nbsp;</td><td>Dissolve at 100 units/ mL, aliquote and store at -20 &amp;deg;C, avoid repeated freeze/ thaw</td></tr><tr><td>Aprotinin from bovine lung, lyophilized powder</td><td>Sigma</td><td>A3428</td><td>Dissolve at 50 mg/ mL, aliquote and store at -20 &amp;deg;C, avoid repeated freeze/ thaw</td></tr><tr><td>&lt;strong&gt;Name&lt;/strong&gt;</td><td>&lt;strong&gt;Company&lt;/strong&gt;</td><td>&lt;strong&gt;Catalog Number&lt;/strong&gt;</td><td>&lt;strong&gt;Comments&lt;/strong&gt;</td></tr><tr><td>&lt;strong&gt;Growth factors&lt;/strong&gt;</td><td></td><td></td><td></td></tr><tr><td>Recombinant human VEGFA</td><td>R&amp;amp;D Systems</td><td>293-VE-010</td><td>50 ng/ mL final concentration</td></tr><tr><td>Recombinant human VEGFC</td><td>R&amp;amp;D Systems</td><td>752-VC-025</td><td>200 ng/ mL final concentration</td></tr><tr><td>Recombinant human TGF&amp;beta;</td><td>Millipore</td><td>GF346</td><td>1 ng/ mL final concentration</td></tr><tr><td>Recombinant human bFGF</td><td>Millipore</td><td>01-106</td><td>50 ng/ mL final concentration</td></tr><tr><td>&lt;strong&gt;Name&lt;/strong&gt;</td><td>&lt;strong&gt;Company&lt;/strong&gt;</td><td>&lt;strong&gt;Catalog Number&lt;/strong&gt;</td><td>&lt;strong&gt;Comments&lt;/strong&gt;</td></tr><tr><td>&lt;strong&gt;Primary antibodies&lt;/strong&gt;</td><td></td><td></td><td></td></tr><tr><td>CD31 (JC70A)</td><td>Dako</td><td>M0823</td><td>Used at 1:100 dilution, Donkey anti Mouse Alexa 488 Secondary Ab</td></tr><tr><td>CD34 (QBEND10)</td><td>Dako</td><td>M716501-2</td><td>Used at 1:100 dilution, Donkey anti Mouse Alexa 488 Secondary Ab</td></tr><tr><td>CD45 (2B11+PD7/26)</td><td>Dako</td><td>M070129-2</td><td>Used at 1:100 dilution, Donkey anti Mouse Alexa 488 Secondary Ab</td></tr><tr><td>CD68</td><td>ImmunoWay</td><td>RLM3161</td><td>Used at 1:100 dilution, Donkey anti Mouse Alexa 488 Secondary Ab</td></tr><tr><td>Cleaved caspase-3 (5A1E)</td><td>Cell Signalling</td><td>9664</td><td>Used at 1:200 dilution, Goat anti Rabbit Alexa 594 Secondary Ab</td></tr><tr><td>ERG (EP111)</td><td>Dako</td><td>M731429-2</td><td>Used at 1:100 dilution, Goat anti Rabbit Alexa 594 Secondary Ab</td></tr><tr><td>GFAP</td><td>Dako</td><td>Z0334</td><td>Used at 1:100 dilution, Goat anti Rabbit Alexa 594 Secondary Ab</td></tr><tr><td>Ki67</td><td>Leica Microsystems</td><td>NCL-Ki67p</td><td>Used at 1:1500 dilution, Goat anti Rabbit Alexa 594 Secondary Ab</td></tr><tr><td>Lyve1</td><td>R&amp;amp;D Systems</td><td>AF2089</td><td>Used at 1:100 dilution, Donkey anti Goat Alexa 568 Secondary Ab</td></tr><tr><td>NG2</td><td>Millipore</td><td>AB5320</td><td>Used at 1:100 dilution, Goat anti Rabbit Alexa 594 Secondary Ab</td></tr><tr><td>Prox1</td><td>ReliaTech</td><td>102-PA32</td><td>Used at 1:200 dilution, Goat anti Rabbit Alexa 568 Secondary Ab</td></tr><tr><td>Prox1</td><td>R&amp;amp;D Systems</td><td>AF2727</td><td>Used at 1:40 dilution, Chicken anti Goat Alexa 594 Secondary Ab</td></tr><tr><td>VEGFR3 (9D9F9)</td><td>Millipore</td><td>MAB3757</td><td>Used at 1:100 dilution, Donkey anti Mouse Alexa 488 Secondary Ab</td></tr><tr><td>&amp;alpha;-SMA (1A4)</td><td>Sigma</td><td>C6198</td><td>Used at 1:400 dilution, Cy3 conjugated</td></tr><tr><td>&lt;strong&gt;Name&lt;/strong&gt;</td><td>&lt;strong&gt;Company&lt;/strong&gt;</td><td>&lt;strong&gt;Catalog Number&lt;/strong&gt;</td><td>&lt;strong&gt;Comments&lt;/strong&gt;</td></tr><tr><td>&lt;strong&gt;Secondary antibodies&lt;/strong&gt;</td><td></td><td></td><td></td></tr><tr><td>Alexa Fluor488 Donkey Anti-Mouse IgG</td><td>Life Technologies</td><td>A-21202</td><td>Used at 1:500 dilution</td></tr><tr><td>Alexa Fluor594 Goat Anti-Rabbit IgG</td><td>Invitrogen</td><td>A-11012</td><td>Used at 1:500 dilution</td></tr><tr><td>Alexa Fluor568 Donkey anti-Goat IgG</td><td>Thermo Scientific</td><td>A-11057</td><td>Used at 1:500 dilution</td></tr><tr><td>Alexa Fluor568 Goat anti-Rabbit IgG</td><td>Thermo Scientific</td><td>A-11036</td><td>Used at 1:500 dilution</td></tr><tr><td>Alexa Fluor594 Chicken Anti-Goat IgG</td><td>Molecular Probes</td><td>A-21468</td><td>Used at 1:500 dilution</td></tr><tr><td>&lt;strong&gt;Name&lt;/strong&gt;</td><td>&lt;strong&gt;Company&lt;/strong&gt;</td><td>&lt;strong&gt;Catalog Number&lt;/strong&gt;</td><td>&lt;strong&gt;Comments&lt;/strong&gt;</td></tr><tr><td>&lt;strong&gt;Microscopes&lt;/strong&gt;</td><td></td><td></td><td></td></tr><tr><td>Axiovert 200 inverted epifluorescence microscope</td><td>Zeiss</td><td></td><td>For imaging of the fresh and fibrin-embedded FT</td></tr><tr><td>SZX9 upright dissection stereomicroscope</td><td>Olympus</td><td></td><td>For FT dissection</td></tr><tr><td>LSM 780 confocal microscope</td><td>Zeiss</td><td></td><td>For imaging of whole-mount immunostained FT</td></tr><tr><td>AxioImager.Z1 upright epifluorescence microscope with Apotome</td><td>Zeiss</td><td></td><td>For imaging of whole-mount immunostained FT</td></tr></tbody></table>

an ex vivo tissue culture model for fibrovascular complications in proliferative diabetic retinopathy

Diabetic retinopathy (DR) is the most common microvascular complication of diabetes and one of the leading causes of blindness in working-age adults. No current animal models of diabetes and oxygen-induced retinopathy develop the full-range progressive changes manifested in human proliferative diabetic retinopathy (PDR). Therefore, understanding of the disease pathogenesis and pathophysiology has relied largely on the use of histological sections and vitreous samples in approaches that only provide steady-state information on the involved pathogenic factors. Increasing evidence indicates that dynamic cell-cell and cell-extracellular matrix (ECM) interactions in the context of three-dimensional (3D) microenvironments are essential for the mechanistic and functional studies towards the development of new treatment strategies. Therefore, we hypothesized that the pathological fibrovascular tissue surgically excised from eyes with PDR could be utilized to reliably unravel the cellular and molecular mechanisms of this devastating disease and to test the potential for novel clinical interventions. Towards this end, we developed a novel method for 3D ex vivo culture of surgically-excised patient-derived fibrovascular tissue (FT), which will serve as a relevant model of human PDR pathophysiology. The FTs are dissected into explants and embedded in fibrin matrix for ex vivo culture and 3D characterization. Whole-mount immunofluorescence of the native FTs and end-point cultures allows thorough investigation of tissue composition and multicellular processes, highlighting the importance of 3D tissue-level characterization for uncovering relevant features of PDR pathophysiology. This model will allow the simultaneous assessment of molecular mechanisms, cellular/tissue processes and treatment responses in the complex context of dynamic biochemical and physical interactions within the PDR tissue architecture and microenvironment. Since this model recapitulates PDR pathophysiology, it will also be amenable for testing or developing new treatments.

Deeper understanding of the PDR fibrovascular tissue properties and protein expression has relied mainly on vitreous samples and thin histological FT sections3,15,16,17. To develop a method for thorough investigation of the 3D tissue organization and multicellular physiopathological processes of PDR, we set out to utilize the surgically excised, patient-derived pathological FTs for 3D characterization and ex vivo culture. The fresh FTs are transferred to the research laboratory and processed as illustrated in the schematic workflow in Figure 1.
The FTs can be imaged prior to dissection for qualitative assessment and documentation (Figure 2). As shown in Figure 2, the FTs display great inter-patient variation in size, density and abundance of vascular structures. In some tissues, loose cells, presumably inflammatory/immune cells or red blood cells, as well as pervious vascular structures of different caliber can also be easily distinguished (Figure 2). After dissection, a decision needs to be made on the downstream usage of the limiting number of the obtained explants. A portion of the explants is embedded within fibrin matrix and fixed after fibrin gel formation while the remaining explants can be subjected to ex vivo culture on a separate plate (Figure 1). The fresh FTs have also been successfully utilized for ultrastructural characterization by electron microscopy. The samples can be either processed for conventional transmission electron microscopy (TEM) of ultrathin sections or for serial block face-scanning electron microscopy (SBF-SEM)3,11.
The fixed fibrin gels can be stored for several weeks and stained by whole-mount immunofluorescence18,19. The stained samples are likewise stable when stored at 4 °C in the dark. The thick FT/fibrin gels can be imaged time-efficiently with epifluorescence microscope equipped with an optical sectioning function, useful for removing scattered out-of-focus light. Imaging with this method provides fine visualization of the structures. Alternatively, confocal microscopy, though more time-demanding, can allow the capture of finer details. The characterization of the freshly fibrin-embedded and fixed, uncultured, native FTs by whole-mount immunofluorescence allows the characterization of vascular structures, multiple cell types and their reciprocal arrangement within the 3D PDR tissue landscape11. For example, CD31 antibodies can be used to display the endothelium and NG2 to display pericytes (Figure 3) while Lyve1 antibodies visualize newly discovered lymphatic-like endothelial structures (Figure 4)11. Multiple combinations of antibodies can be used to visualize several structures and cell types (see Table of Materials); for example, ERG can also visualize the endothelium, which has a discontinuos expression pattern in the abnormal PDR neovasculature. The vascular structures stained with a membrane marker (e.g., CD31 and Lyve1) can be quantitatively analysed for preservation and density by using Angiotool, a free-source software developed by the NIH National Cancer Institute11,20. 3D volumes can also be rendered from the dataset obtained (see Video 1). If an antibody is not suitable for whole-mount immunofluorescence, the fibrin droplets can alternatively be embedded in paraffin, cut to thin sections and analyzed by immunohistochemistry. In this case the droplets benefit from overnight fixation at 4 °C instead of the 1h at RT.
Ex vivo culture sustains the growth of the fibrin-embedded FTs, developing cellular outgrowths already after two days (Figure 5). The in vitro fibrin gel is used as the matrix for ex vivo culture, since it typifies the in vivo provisional ECM, formed after thrombin cleavage of serum fibrinogen at the sites of vascular leakage, in direct contact with the leaky PDR neovessels in the inflamed fibrotic milieu15,21,22.
PDR is a microvascular complication characterized by an angiogenic and fibrotic response, and the FT explants retain this cellular repertoire in culture, as well as respond efficiently to exogenous stimuli added to the culture media11. The representative data in Figure 6 shows that the PDR ex vivo cultures induced sprouting of the CD31-positive endothelium and vasculature preservation in response to VEGFA, while TGFβ induced a fibrotic response reflected by the outgrowth on NG2-positive pericytes/SMCs. Several exogenous stimuli can be tested and, when informed by measurements of their in vivo vitreal abundance, the herein developed PDR ex vivo culture model can reveal novel microenvironment and context dependent PDR pathological mechanisms that cannot be visualized in fixed tissue material.
<img alt="Pars plana vitrectomy diagram with vitrector, fibrovascular dissection, and ex vivo culture setup." class="xfigimg" src="/files/ftp_upload/59090/59090fig1.jpg" data-altupdatedat="1747736610000" data-alt="Figure 1"> 
Figure 1. Ex vivo PDR fibrovascular tissue culture model. Schematic representation of the workflow from the vitreoretinal surgery (pars plana vitrectomy) for the excision of the FT to its dissection into explants and embedding into fibrin for three-dimensional characterization and ex vivo culture. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/59090/59090fig1large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Microscopy image of arthropod fossils, composite arrangement, paleontological study." class="xfigimg" src="/files/ftp_upload/59090/59090fig2.jpg" data-altupdatedat="1747736610000" data-alt="Figure 2"> 
Figure 2. Freshly excised PDR fibrovascular tissues prior to dissection. Phase contast micrographs of freshly excised FTs taken prior to dissection. The FTs are highly variable in size, density and abundance of vascular structures. Arrowheads indicate vascular structures of different caliber. The red partially transparent line highlights two individual vessels of different caliber. The images were taken using an inverted epifluorescence microscope with a 5x, 0.15 numerical aperture (NA), objective. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/59090/59090fig2large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 3" class="xfigimg" src="/files/ftp_upload/59090/59090fig3.jpg"> 
Figure 3. Whole-mount immunofluorescence of a native PDR fibrovascular tissue. Epifluorescence micrograph of a native PDR FT stained by whole-mount immunofluorescence. CD31 (A, green) visualizes the endothelium while NG2 (B, red) visualizes the pericytes within the irregular neovascular structures. Merged images are shown in (C). DAPI (blue) counterstain visualizes nuclei. The image was taken using an upright epifluorescence microscope with optical sectioning function and combined with a computer-controlled 1.3 megapixel monochrome CCD camera and image acquisition software, using a 40x, 1.4 NA, oil objective. Nine optical sections were combined by using image processing software ImageJ. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/59090/59090fig3large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Fluorescence microscopy image showing protein localization in cells; green, red, blue channels." class="xfigimg" src="/files/ftp_upload/59090/59090fig4.jpg" data-altupdatedat="1747736610000" data-alt="Figure 4"> 
Figure 4. Whole-mount immunofluorescence of a native PDR fibrovascular tissue. Epifluorescence micrograph of a native PDR FT stained by whole-mount immunofluorescence. CD31 (A, green) visualizes the endothelium while Lyve1 (B, red) visualizes the newly discovered lymphatic-like endothelial structures. Merged images are shown in (C). Hoechst-33342 (blue) counterstain visualizes nuclei. The image was taken using an upright epifluorescence microscope with optical sectioning function and combined with a computer-controlled 1.3 megapixel monochrome CCD camera and image acquisition software, using a 20x, 0.8 NA, objective. Four optical sections were combined by using image processing software ImageJ. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/59090/59090fig4large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Time-lapse microscopy of cell growth over 8 days; diagram shows development stages and scale bars." class="xfigimg" src="/files/ftp_upload/59090/59090fig5.jpg" data-altupdatedat="1747736610000" data-alt="Figure 5"> 
Figure 5. Ex vivo growth of the PDR fibrovascular tissues. Phase contrast micrographs of two FT ex vivo cultures at indicated time points (day). The FTs grow upon ex vivo culture, developing cellular outgrowths already after two days. The images were taken using an inverted epifluorescence microscope with a 5x, 0.15 NA, objective. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/59090/59090fig5large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Immunofluorescence microscopy of cell cultures with VEGFA and TGFβ treatments, stained for protein." class="xfigimg" src="/files/ftp_upload/59090/59090fig6.jpg" data-altupdatedat="1747736610000" data-alt="Figure 6"> 
Figure 6. Whole-mount immunofluorescence of PDR fibrovascular tissues cultured ex vivo untreated (CTRL), or in presence of VEGFA or TGFβ. Epifluorescence micrograph of FT cultured ex vivo untreated (CTRL) or in presence of VEGFA or TGFβ for 9 days and subsequently stained by whole-mount immunofluorescence. CD31 (green) visualizes the endothelium while NG2 (red) visualizes the pericytes. DAPI (blue) counterstain visualizes nuclei. VEGFA stabilized the vasculature while TGFβ induced a fibrotic response. The images were taken using an upright epifluorescence microscope with optical sectioning function and combined with a computer-controlled 1.3 megapixel monochrome CCD camera and image acquisition software, using a 20x, 0.8 NA, objective. Nine optical sections were combined by using image processing software ImageJ. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/59090/59090fig6large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Microscopy image displaying neural network structure, featuring fluorescence-labeled nerve fibers." class="xfigimg" src="/files/ftp_upload/59090/59090vid1.jpg" data-altupdatedat="1747736610000" data-alt="Video"> 
Video 1. 3D volume reconstruction of a native FT stained by whole-mount immunofluorescence. CD31 (green), Lyve1 (red). Hoechst-33342 counterstain (blue) visualizes nuclei. The image was taken using an upright epifluorescence microscope with optical sectioning function and combined with a computer-controlled 1.3 megapixel monochrome CCD camera and image acquisition software, using a 20x, 0.8 NA, objective. 3D volume reconstruction and video rendering was performed using a commercial software. A portion of the video is reprinted with permission from Gucciardo et al.11. <a href="https://www-jove-com.remotexs.ntu.edu.sg/files/ftp_upload/59090/JoVE_Gucciardo_Movie1.mp4" target="_blank">Please click here to view this video. (Right-click to download.)</a>

Watch this Scientific Journal Video about An Ex Vivo Tissue Culture Model for Fibrovascular Complications in Proliferative Diabetic Retinopathy at JoVE.com

An Ex Vivo Tissue Culture Model for Fibrovascular Complications in Proliferative Diabetic Retinopathy

Here, we present a protocol to study the pathophysiology of proliferative diabetic retinopathy by using patient-derived, surgically-excised, fibrovascular tissues for three-dimensional native tissue characterization and ex vivo culture. This ex vivo culture model is also amenable for testing or developing new treatments.

Diabetic retinopathy (DR) is the most common microvascular complication of diabetes and one of the leading causes of blindness in working-age adults. No ...

an-ex-vivo-tissue-culture-model-for-fibrovascular-complications

Nanyang Technological University

Research

JoVE Journal

Medicine

7.7K Views.  University of Helsinki. Diabetische retinopathie is de meest voorkomende microvasculaire complicatie van diabetes. Deze methode kan helpen bij het beantwoorden van belangrijke vragen over de pathofysiologie van de eindfase ziekte proliferative diabetische retinopathie. Deze techniek maakt de deconstructie van het inheemse driedimensionale weefsellandschap en het onderzoek van weefselpathofysiologie in levend patiëntmateriaal met directe klinische relevantie mogelijk. Raadpleeg het tekstprotocol voor details over de...

Video: An Ex Vivo Tissue Culture Model for Fibrovascular Complications in Proliferative Diabetic Retinopathy

Human Ex vivo Wound Model and Whole-Mount Staining Approach to Accurately Evaluate Skin Repair

Chronic non-healing wounds, which primarily affect the elderly and diabetic, are a significant area of clinical unmet need. Unfortunately, current chronic wound treatments are inadequate, while available pre-clinical models poorly predict the clinical efficacy of new therapies. Here we describe a high throughput, pre-clinical model to assess multiple aspects of the human skin repair response. Partial thickness wounds were created in human ex vivo skin and cultured across a healing time course. Skin wound biopsies were collected in fixative for the whole-mount staining procedure. Fixed samples were blocked and incubated in primary antibody, with detection achieved via fluorescently conjugated secondary antibody. Wounds were counterstained and imaged via confocal microscopy before calculating percentage wound closure (re-epithelialization) in each biopsy. Applying this protocol, we reveal that 2 mm excisional wounds created in healthy donor skin are fully re-epithelialized by day 4-5 post-wounding. On the contrary, closure rates of diabetic skin wounds are significantly reduced, accompanied by perturbed barrier reformation. Combining human skin wounding with a novel whole-mount staining approach allows a rapid and reproducible method to quantify ex vivo wound repair. Collectively, this protocol provides a valuable human platform to evaluate the effectiveness of potential wound therapies, transforming pre-clinical testing and validation.

Here we demonstrate an optimized technique for assessing wound repair using ex vivo human skin combined with a whole-mount staining approach. This methodology provides a pre-clinical platform for the evaluation of potential wound therapies.

Chronic non-healing wounds, which primarily affect the elderly and diabetic, are a significant area of clinical unmet need. Unfortunately, current chronic ...

Developmental Biology

Human Dupuytren's Ex Vivo Culture for the Study of Myofibroblasts and Extracellular Matrix Interactions

Organ fibrosis or &#8220;scarring&#8221; is known to account for a high death toll due to the extensive amount of disorders and organs affected (from cirrhosis to cardiovascular diseases). There is no effective treatment and the in vitro tools available do not mimic the in vivo situation rendering the progress of the out of control wound healing process still enigmatic.
To date, 2D and 3D cultures of fibroblasts derived from DD patients are the main experimental models available. Primary cell cultures have many limitations; the fibroblasts derived from DD are altered by the culture conditions, lack cellular context and interactions, which are crucial for the development of fibrosis and weakly represent the derived tissue. Real-time PCR analysis of fibroblasts derived from control and DD samples show that little difference is detectable. 3D cultures of fibroblasts include addition of extracellular matrix that alters the native conditions of these cells. 
As a way to characterize the fibrotic, proliferative properties of these resection specimens we have developed a 3D culture system, using intact human resections of the nodule part of the cord. The system is based on transwell plates with an attached nitrocellulose membrane that allows contact of the tissue with the medium but not with the plastic, thus, preventing the alteration of the tissue. No collagen gel or other extracellular matrix protein substrate is required. The tissue resection specimens maintain their viability and proliferative properties for 7 days. This is the first &#8220;organ&#8221; culture system that allows human resection specimens from DD patients to be grown ex vivo and functionally tested, recapitulating the in vivo situation.

Human Dupuytren's Ex Vivo Culture for the Study of Myofibroblasts and Extracellular Matrix Interactions

Dupuytren&#8217;s disease (DD) is a fibroproliferative disease of the palm of the hand. Here, we present a protocol to culture resection specimens from DD in a three-dimensional (3D) culture system. Such short-term culture system allows preservation of the 3D structure and molecular properties of the fibrotic tissue.

Organ fibrosis or &#8220;scarring&#8221; is known to account for a high death toll due to the extensive amount of disorders and organs affected (from ...

Perfusable Vascular Network with a Tissue Model in a Microfluidic Device

A spheroid (a multicellular aggregate) is regarded as a good model of living tissues in the human body. Despite the significant advancement in the spheroid cultures, a perfusable vascular network in the spheroids remains a critical challenge for long-term culture required to maintain and develop their functions, such as protein expressions and morphogenesis. The protocol presents a novel method to integrate a perfusable vascular network within the spheroid in a microfluidic device. To induce a perfusable vascular network in the spheroid, angiogenic sprouts connected to microchannels were guided to the spheroid by utilizing angiogenic factors from human lung fibroblasts cultured in the spheroid. The angiogenic sprouts reached the spheroid, merged with the endothelial cells co-cultured in the spheroid, and formed a continuous vascular network. The vascular network could perfuse the interior of the spheroid without any leakage. The constructed vascular network may be further used as a route for supply of nutrients and removal of waste products, mimicking blood circulation in vivo. The method provides a new platform in spheroid culture toward better recapitulation of living tissues.

The protocol describes how to engineer a perfusable vascular network in a spheroid. The spheroid's surrounding microenvironment is devised to induce angiogenesis and connect the spheroid to the microchannels in a microfluidic device. The method allows the perfusion of the spheroid, which is a long-awaited technique in three-dimensional cultures.

A spheroid (a multicellular aggregate) is regarded as a good model of living tissues in the human body. Despite the significant advancement in the ...

Bioengineering

Ex Vivo Corneal Organ Culture Model for Wound Healing Studies

The cornea has been used extensively as a model system to study wound healing. The ability to generate and utilize primary mammalian cells in two dimensional (2D) and three dimensional (3D) culture has generated a wealth of information not only about corneal biology but also about wound healing, myofibroblast biology, and scarring in general. The goal of the protocol is an assay system for quantifying myofibroblast development, which characterizes scarring. We demonstrate a corneal organ culture ex vivo model using pig eyes. In this anterior keratectomy wound, corneas still in the globe are wounded with a circular blade called a trephine. A plug of approximately 1/3 of the anterior cornea is removed including the epithelium, the basement membrane, and the anterior part of the stroma. After wounding, corneas are cut from the globe, mounted on a collagen/agar base, and cultured for two weeks in supplemented-serum free medium with stabilized vitamin C to augment cell proliferation and extracellular matrix secretion by resident fibroblasts. Activation of myofibroblasts in the anterior stroma is evident in the healed cornea. This model can be used to assay wound closure, the development of myofibroblasts and fibrotic markers, and for toxicology studies. In addition, the effects of small molecule inhibitors as well as lipid-mediated siRNA transfection for gene knockdown can be tested in this system.

A protocol for an ex vivo corneal organ culture model useful for wound healing studies is described. This model system can be used to assess the effects of agents to promote regenerative healing or drug toxicity in an organized 3D multicellular environment.

The cornea has been used extensively as a model system to study wound healing. The ability to generate and utilize primary mammalian cells in two ...

Long-Term, Serum-Free Cultivation of Organotypic Mouse Retina Explants with Intact Retinal Pigment Epithelium

In ophthalmic research, there is a strong need for in vitro models of the neuroretina. Here, we present a detailed protocol for organotypic culturing of the mouse neuroretina&#160;with intact retinal pigment epithelium (RPE). Depending on the research question, retinas can be isolated from wild-type animals or from disease models, to study, for instance, diabetic retinopathy or hereditary retinal degeneration. Eyes from early postnatal day 2&#8211;9 animals are enucleated under aseptic conditions. They are partially digested in proteinase K to allow for a detachment of the choroid from the RPE. Under the stereoscope, a small incision is made in the cornea creating two edges from where the choroid and sclera can be gently peeled off from the RPE and neuroretina. The lens is then removed, and the eyecup is cut in four points to give it a four-wedged shape resembling a clover leaf. The tissue is finally transferred in a hanging drop into a cell culture insert holding a polycarbonate culturing membrane. The cultures are then maintained in R16 medium, without serum or antibiotics, under entirely defined conditions, with a medium change every second day.
The procedure described enables the isolation of the retina and the preservation of its normal physiological and histotypic context for culturing periods of at least 2 weeks. These features make organotypic retinal explant cultures an excellent model with high predictive value, for studies into retinal development, disease mechanisms, and electrophysiology, while also enabling pharmacological screening.

The protocol describes organotypic explants of mouse neuroretina, cultivated together with its retinal pigment epithelium (RPE), in R16 defined medium, free of serum and antibiotics. This method is relatively simple to perform, less expensive, and time-consuming when compared to in vivo experiments, and can be adapted to numerous experimental applications.

In ophthalmic research, there is a strong need for in vitro models of the neuroretina. Here, we present a detailed protocol for organotypic culturing of ...

Neuroscience

Quantification of Vascular Parameters in Whole Mount Retinas of Mice with Non-Proliferative and Proliferative Retinopathies

Retinopathies are a heterogeneous group of diseases that affect the neurosensory tissue of the eye. They are characterized by neurodegeneration, gliosis&#160;and a progressive change in vascular function and structure. Although the onset of the retinopathies is characterized by subtle disturbances in visual perception, the modifications in the vascular plexus are the first signs detected by clinicians. The absence or presence of neovascularization determines whether the retinopathy is classified as either non-proliferative (NPDR) or proliferative (PDR). In this sense, several animal models tried to mimic specific vascular features of each stage to determine the underlying mechanisms involved in endothelium alterations, neuronal death and other events taking place in the retina. In this article, we will provide a complete description of the procedures required for the measurement of retinal vascular parameters in adults and early birth mice at postnatal day (P)17. We will detail the protocols to carry out retinal vascular staining with Isolectin GSA-IB4 in whole mounts for later microscopic visualization. Key steps for image processing with Image J Fiji software are also provided, therefore, the readers will be able to measure vessel density, diameter and tortuosity, vascular branching, as well as avascular and neovascular areas. These tools are highly helpful to evaluate and quantify vascular alterations in both non-proliferative and proliferative retinopathies.

This article describes a well-established and reproducible lectin stain assay for the whole mount retinal preparations and the protocols required for the quantitative measurement of vascular parameters frequently altered in proliferative and non-proliferative retinopathies.

Retinopathies are a heterogeneous group of diseases that affect the neurosensory tissue of the eye. They are characterized by neurodegeneration, ...

Characterization of a Novel Human Organotypic Retinal Culture Technique

Previous human organotypic retinal culture (HORC) models have utilized detached retinas; however, without the structural support conferred by retinal pigment epithelium-choroid (RPE-choroid) and sclera, the integrity of the fragile retina can easily be compromised. The aim of this study was to develop a novel HORC model that contains the retina, RPE-choroid and sclera to maintain retinal integrity when culturing retinal explants.
After cutting circumferentially along the limbus to remove iris and lens, four deep incisions were made to flatten the eyecup. In contrast to previous HORC protocols, a trephine was used to cut through not only the retina but also the RPE-choroid and sclera. The resultant triple-layered explants were cultured for 72 h. Hematoxylin and Eosin staining (H&#38;E) was used to assess anatomical structures and retinal explants were further characterized by immunohistochemistry (IHC) for apoptosis, M&#252;ller cell integrity and retinal inflammation. To confirm the possibility of disease induction, explants were exposed to high glucose (HG) and pro-inflammatory cytokines (Cyt), to mimic diabetic retinopathy (DR). The Luminex magnetic bead assay was used to measure DR-related cytokines released into the culture medium.
H&#38;E staining revealed distinct retinal lamellae and compact nuclei in retinal explants with the underlying RPE-choroid and sclera, while retinas without the underlying structures exhibited reduced thickness and severe nuclei loss. IHC results indicated absence of apoptosis and retinal inflammation as well as preserved M&#252;ller cell integrity. The Luminex&#160;assays showed significantly increased secretion of DR-associated pro-inflammatory cytokines in retinal explants exposed to HG + Cyt relative to baseline levels at 24 h.
We successfully developed and characterized a novel HORC protocol in which retinal integrity was preserved without apoptosis or retinal inflammation. Moreover, the induced secretion of DR-associated pro-inflammatory biomarkers when exposing retinal explants to HG + Cyt suggests that this model could be used for clinically translatable retinal disease studies.

This study aims to develop a novel human organotypic retinal culture (HORC) model that prevents compromising retinal integrity during explant handling. This is achieved by culturing the retina with the overlying vitreous and the underlying retinal pigment&#160;epithelium-choroid (RPE-choroid) and sclera.

Previous human organotypic retinal culture (HORC) models have utilized detached retinas; however, without the structural support conferred by retinal ...

A Human Corneal Organ Culture Model of Descemet's Stripping Only with Accelerated Healing Stimulated by Engineered Fibroblast Growth Factor 1

Fuchs Endothelial Corneal Dystrophy (FECD) results from dysfunctional corneal endothelial cells (CECs) and is currently treated by transplantation of the whole cornea or Descemet's membrane. Recent developments in ocular surgery have established Descemet's Stripping Only (DSO), a surgical technique in which a central circle of guttae-dense Descemet's membrane is removed to allow for the migration of CECs onto the smooth stroma, restoring function and vision to the cornea. While this potential treatment option is of high interest in the field of ophthalmic research, no successful ex vivo models of DSO have been established and clinical data is limited. This work presents a novel wound-healing model simulating DSO in human donor corneas. Using this approach to evaluate the efficacy of the human engineered FGF1 (NM141), we found that treatment accelerated healing via stimulation of migration and proliferation of CECs. This finding was confirmed in 11 pairs of human corneas with signs of dystrophy reported by the eye banks in order to verify that these results can be replicated in patients with Fuchs' Dystrophy, as the target population of the DSO procedure.

Descemet's Stripping Only is an experimental procedure wherein patients with central corneal guttae resulting from Fuchs Endothelial Corneal Dystrophy have Descemet's membrane stripped for peripheral cells to regenerate the endothelial layer. We present novel methodology simulating DSO in dystrophic human corneas ex vivo with accelerated healing stimulated by eFGF1 (NM141).

Fuchs Endothelial Corneal Dystrophy (FECD) results from dysfunctional corneal endothelial cells (CECs) and is currently treated by transplantation of the ...

Retinal Explant of the Adult Mouse Retina as an Ex Vivo Model for Studying Retinal Neurovascular Diseases

One of the challenges in retina research is studying the cross-talk between different retinal cells such as retinal neurons, glial cells, and vascular cells. Isolating, culturing, and sustaining retinal neurons in vitro have technical and biological limitations. Culturing retinal explants may overcome these limitations and offer a unique ex vivo model to study the cross-talk between various retinal cells with well-controlled biochemical parameters and independent of the vascular system. Moreover, retinal explants are an effective screening tool for studying novel pharmacological interventions in various retinal vascular and neurodegenerative diseases such as diabetic retinopathy. Here, we describe a detailed protocol for retinal explants' isolation and culture for an extended period. The manuscript also presents some of the technical problems during this procedure that may affect the desired outcomes and reproducibility of the retinal explant culture. The immunostaining of the retinal vessels, glial cells, and neurons demonstrated intact retinal capillaries and neuroglial cells after 2 weeks from the beginning of the retinal explant culture. This establishes retinal explants as a reliable tool for studying changes in the retinal vasculature and neuroglial cells under conditions that mimic retinal diseases such as diabetic retinopathy.

Retinal Explant of the Adult Mouse Retina as an Ex Vivo Model for Studying Retinal Neurovascular Diseases

This protocol presents and describes steps for the isolation, dissection, culturing, and staining of retinal explants obtained from an adult mouse. This method is beneficial as an ex vivo model for studying different retinal neurovascular diseases such as diabetic retinopathy.

One of the challenges in retina research is studying the cross-talk between different retinal cells such as retinal neurons, glial cells, and vascular ...

An Ex Vivo Choroid Sprouting Assay of Ocular Microvascular Angiogenesis

Pathological choroidal angiogenesis, a salient feature of age-related macular degeneration, leads to vision impairment and blindness. Endothelial cell (EC) proliferation assays using human retinal microvascular endothelial cells (HRMECs) or isolated primary retinal ECs are widely used in vitro models to study retinal angiogenesis. However, isolating pure murine retinal endothelial cells is technically challenging and retinal ECs may have different proliferation responses than choroidal endothelial cells and different cell/cell interactions. A highly reproducible ex vivo choroidal sprouting assay as a model of choroidal microvascular proliferation was developed. This model includes the interaction between choroid vasculature (EC, macrophages, pericytes) and retinal pigment epithelium (RPE). Mouse RPE/choroid/scleral explants are isolated and incubated in growth-factor-reduced basal membrane extract (BME) (day 0). Medium is changed every other day and choroid sprouting is quantified at day 6. The images of individual choroid explant are taken with an inverted phase microscope and the sprouting area is quantified using a semi-automated macro plug-in to the ImageJ software developed in this lab. This reproducible ex vivo choroidal sprouting assay can be used to assess compounds for potential treatment and for microvascular disease research to assess pathways involved in choroidal micro vessel proliferation using wild type and genetically modified mouse tissue.

This protocol presents choroid sprouting assay, an ex vivo model of microvascular proliferation. This assay can be used to assess pathways involved in proliferating choroidal micro vessels and assess drug treatments using wild type and genetically modified mouse tissue.

Pathological choroidal angiogenesis, a salient feature of age-related macular degeneration, leads to vision impairment and blindness. Endothelial cell ...

An Ex Vivo Tissue Culture Model for Fibrovascular Complications in Proliferative Diabetic Retinopathy

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